miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24865 3' -65.5 NC_005284.1 + 23168 1.08 0.000138
Target:  5'- aUGCGCCCUCGACGCCGCCCGCACCCAa -3'
miRNA:   3'- -ACGCGGGAGCUGCGGCGGGCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 45031 0.75 0.055836
Target:  5'- uUGCGCCgUCGccuCGaCCGCCCGCGCUUc -3'
miRNA:   3'- -ACGCGGgAGCu--GC-GGCGGGCGUGGGu -5'
24865 3' -65.5 NC_005284.1 + 21964 0.75 0.057379
Target:  5'- uUGUGCuCCUugccguaacCGACGCCGcCCCGCaACCCGc -3'
miRNA:   3'- -ACGCG-GGA---------GCUGCGGC-GGGCG-UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 35503 0.74 0.060588
Target:  5'- uUGCGUCCgUCGACgGUCGUCUGCACCUu -3'
miRNA:   3'- -ACGCGGG-AGCUG-CGGCGGGCGUGGGu -5'
24865 3' -65.5 NC_005284.1 + 35764 0.74 0.067536
Target:  5'- -uCGCCCUCGGCgaucGCCGCCUGCAgcgaCCAc -3'
miRNA:   3'- acGCGGGAGCUG----CGGCGGGCGUg---GGU- -5'
24865 3' -65.5 NC_005284.1 + 44645 0.74 0.06939
Target:  5'- cGUGCCCguacgcgCGAgCGCCGUCUGCGCCg- -3'
miRNA:   3'- aCGCGGGa------GCU-GCGGCGGGCGUGGgu -5'
24865 3' -65.5 NC_005284.1 + 45220 0.71 0.10104
Target:  5'- cUGCGCUUuggCGAgCGCUGCCUGCGCCg- -3'
miRNA:   3'- -ACGCGGGa--GCU-GCGGCGGGCGUGGgu -5'
24865 3' -65.5 NC_005284.1 + 1112 0.71 0.102937
Target:  5'- cGUGCCCgUCGACgacuugaucgaguuGCCGCCUGCACa-- -3'
miRNA:   3'- aCGCGGG-AGCUG--------------CGGCGGGCGUGggu -5'
24865 3' -65.5 NC_005284.1 + 44446 0.71 0.103761
Target:  5'- cGCGUgaUCUCGACGCCGCuUCGCACg-- -3'
miRNA:   3'- aCGCG--GGAGCUGCGGCG-GGCGUGggu -5'
24865 3' -65.5 NC_005284.1 + 31921 0.71 0.10655
Target:  5'- cGCGgCgCUCGACGCCuuCCCGcCGCCUAu -3'
miRNA:   3'- aCGCgG-GAGCUGCGGc-GGGC-GUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 53527 0.71 0.10941
Target:  5'- gGC-CCCUCGAUGUucgCGCCCGCAgUCGu -3'
miRNA:   3'- aCGcGGGAGCUGCG---GCGGGCGUgGGU- -5'
24865 3' -65.5 NC_005284.1 + 12799 0.71 0.11175
Target:  5'- gGCGCggagucguucuaCUgGACGCCGCCgcuuCGCGCCCGc -3'
miRNA:   3'- aCGCGg-----------GAgCUGCGGCGG----GCGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 23354 0.71 0.112342
Target:  5'- gGCGCgCCgcagCGGCGCacguCGCCCGCgaacuggcgcaaGCCCAu -3'
miRNA:   3'- aCGCG-GGa---GCUGCG----GCGGGCG------------UGGGU- -5'
24865 3' -65.5 NC_005284.1 + 8715 0.71 0.115347
Target:  5'- cGCGCgCUCGACGCgGCgCGCAguucgaUCCGc -3'
miRNA:   3'- aCGCGgGAGCUGCGgCGgGCGU------GGGU- -5'
24865 3' -65.5 NC_005284.1 + 49065 0.7 0.128131
Target:  5'- gGCGCCUUCuuguucauCGCCGCCggaGCugCCAc -3'
miRNA:   3'- aCGCGGGAGcu------GCGGCGGg--CGugGGU- -5'
24865 3' -65.5 NC_005284.1 + 33465 0.7 0.131526
Target:  5'- cGCGCCC-CGccaGUCGCCCGCAUUgAa -3'
miRNA:   3'- aCGCGGGaGCug-CGGCGGGCGUGGgU- -5'
24865 3' -65.5 NC_005284.1 + 36311 0.7 0.131526
Target:  5'- cGCGUUCUCGGCGCgCaCCCGCGCg-- -3'
miRNA:   3'- aCGCGGGAGCUGCG-GcGGGCGUGggu -5'
24865 3' -65.5 NC_005284.1 + 6949 0.7 0.135004
Target:  5'- gUGCGCUUUCcGCGUCGUCaaugccgaGCACCCAu -3'
miRNA:   3'- -ACGCGGGAGcUGCGGCGGg-------CGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 24738 0.7 0.135004
Target:  5'- gUGCGUCUUCGGC-CCGCUa-CACCCGa -3'
miRNA:   3'- -ACGCGGGAGCUGcGGCGGgcGUGGGU- -5'
24865 3' -65.5 NC_005284.1 + 37044 0.7 0.138567
Target:  5'- aGCGCCCgagcCGGUG-CGCCUGCGCCUg -3'
miRNA:   3'- aCGCGGGa---GCUGCgGCGGGCGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.