miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24870 5' -52.7 NC_005284.1 + 15197 0.7 0.592762
Target:  5'- aAGCACuUCGUGACuggggcuuuggcccuGCUGAuucuCUGGCu -3'
miRNA:   3'- cUCGUGuAGCGCUG---------------CGACUuu--GACCG- -5'
24870 5' -52.7 NC_005284.1 + 16179 0.74 0.390948
Target:  5'- cGGCGCGUCGaUGGCGCUG-GGC-GGCa -3'
miRNA:   3'- cUCGUGUAGC-GCUGCGACuUUGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 16416 0.68 0.711482
Target:  5'- aAGCGCAUCuaCGGCGCcaagGGAGgUGGUg -3'
miRNA:   3'- cUCGUGUAGc-GCUGCGa---CUUUgACCG- -5'
24870 5' -52.7 NC_005284.1 + 16523 0.71 0.554918
Target:  5'- gGGGCcCAUCGUGGgGCUGGugaaUGGCc -3'
miRNA:   3'- -CUCGuGUAGCGCUgCGACUuug-ACCG- -5'
24870 5' -52.7 NC_005284.1 + 16720 0.67 0.774456
Target:  5'- cGAGcCACAUCGgcaCGAUGCUGuGAUccagcgauccagaUGGCa -3'
miRNA:   3'- -CUC-GUGUAGC---GCUGCGACuUUG-------------ACCG- -5'
24870 5' -52.7 NC_005284.1 + 17684 0.66 0.824666
Target:  5'- -cGCGCGaucgugCGCGACGCccUGAAucucGCcGGCg -3'
miRNA:   3'- cuCGUGUa-----GCGCUGCG--ACUU----UGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 17732 0.71 0.523213
Target:  5'- -uGCACGUCGCaGGCGCaggcgcaccggcucgGgcGCUGGCu -3'
miRNA:   3'- cuCGUGUAGCG-CUGCGa--------------CuuUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 17896 0.72 0.479654
Target:  5'- cGGGCGCAUC-CG-CGCaGcgGCUGGCg -3'
miRNA:   3'- -CUCGUGUAGcGCuGCGaCuuUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 19329 0.67 0.764091
Target:  5'- -cGCACcgCGCGagauccaGCGCgacGAAcaagGCUGGCu -3'
miRNA:   3'- cuCGUGuaGCGC-------UGCGa--CUU----UGACCG- -5'
24870 5' -52.7 NC_005284.1 + 20510 1.12 0.001018
Target:  5'- cGAGCACAUCGCGACGCUGAAACUGGCu -3'
miRNA:   3'- -CUCGUGUAGCGCUGCGACUUUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 23048 0.66 0.851719
Target:  5'- aGAGCGCuAUCGCuGGCuGCgGGAGCgagcaUGGUa -3'
miRNA:   3'- -CUCGUG-UAGCG-CUG-CGaCUUUG-----ACCG- -5'
24870 5' -52.7 NC_005284.1 + 23161 0.66 0.805553
Target:  5'- gGGGCACcgaucGUCGCGGCGCguuccgcucgugUGA---UGGCu -3'
miRNA:   3'- -CUCGUG-----UAGCGCUGCG------------ACUuugACCG- -5'
24870 5' -52.7 NC_005284.1 + 23369 0.72 0.511367
Target:  5'- -cGCACGUCGCc-CGC--GAACUGGCg -3'
miRNA:   3'- cuCGUGUAGCGcuGCGacUUUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 28370 0.67 0.785678
Target:  5'- uGAGCACGUaGCGACGaggcuuuGCgGGCa -3'
miRNA:   3'- -CUCGUGUAgCGCUGCgacuu--UGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 29845 0.66 0.824666
Target:  5'- gGAGCGCAugaUCgGCGACGgaGGGAuCUGcGUc -3'
miRNA:   3'- -CUCGUGU---AG-CGCUGCgaCUUU-GAC-CG- -5'
24870 5' -52.7 NC_005284.1 + 30264 0.66 0.833909
Target:  5'- cGGGCGCGuUCGUu-CGCUGucGAgUGGCu -3'
miRNA:   3'- -CUCGUGU-AGCGcuGCGACu-UUgACCG- -5'
24870 5' -52.7 NC_005284.1 + 30866 0.68 0.700458
Target:  5'- cGGCACAUCuGCGGCaGCgc--ACUGGUc -3'
miRNA:   3'- cUCGUGUAG-CGCUG-CGacuuUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 32943 0.7 0.57711
Target:  5'- cGGCAcCAUCgcccacgccgGCGGCGCUGgAAGCgccgGGCa -3'
miRNA:   3'- cUCGU-GUAG----------CGCUGCGAC-UUUGa---CCG- -5'
24870 5' -52.7 NC_005284.1 + 33635 0.66 0.842931
Target:  5'- cGAGcCGCG-CGCGgcauucaucACGCgUGAAgcGCUGGCc -3'
miRNA:   3'- -CUC-GUGUaGCGC---------UGCG-ACUU--UGACCG- -5'
24870 5' -52.7 NC_005284.1 + 33961 0.67 0.795705
Target:  5'- -cGCuCGUCGgcCGGCGCUGcuGCgGGCu -3'
miRNA:   3'- cuCGuGUAGC--GCUGCGACuuUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.