miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24870 5' -52.7 NC_005284.1 + 718 0.72 0.511367
Target:  5'- uGGcCGCGUCGUGAuCGUUGu-GCUGGCc -3'
miRNA:   3'- cUC-GUGUAGCGCU-GCGACuuUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 772 0.76 0.283206
Target:  5'- aAGCAacUCGUGACGUUGGAGCccUGGCa -3'
miRNA:   3'- cUCGUguAGCGCUGCGACUUUG--ACCG- -5'
24870 5' -52.7 NC_005284.1 + 916 0.66 0.851719
Target:  5'- -cGcCGCAUCcCGGcCGCUGugcucgaugcuGAACUGGCg -3'
miRNA:   3'- cuC-GUGUAGcGCU-GCGAC-----------UUUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 965 0.66 0.824666
Target:  5'- -uGUACGccggCGCGACGaCUGAAaaGCaGGCc -3'
miRNA:   3'- cuCGUGUa---GCGCUGC-GACUU--UGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 4325 0.67 0.795705
Target:  5'- aAGCGCAUCgGUGACGaagUGAAauccGCcGGCg -3'
miRNA:   3'- cUCGUGUAG-CGCUGCg--ACUU----UGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 7009 0.68 0.744017
Target:  5'- uGGCGC-UCGCcGgGCUGA--CUGGCg -3'
miRNA:   3'- cUCGUGuAGCGcUgCGACUuuGACCG- -5'
24870 5' -52.7 NC_005284.1 + 8887 0.67 0.785678
Target:  5'- -uGCGCAUCGCG-CGC-GAcACacGGCa -3'
miRNA:   3'- cuCGUGUAGCGCuGCGaCUuUGa-CCG- -5'
24870 5' -52.7 NC_005284.1 + 9406 0.68 0.722426
Target:  5'- aGAGCACcUCGaCGGCaucgUGAAACUcGGCg -3'
miRNA:   3'- -CUCGUGuAGC-GCUGcg--ACUUUGA-CCG- -5'
24870 5' -52.7 NC_005284.1 + 9585 0.66 0.824666
Target:  5'- aAGCGCAggGCGaucGCGCUGccGCggcGGCg -3'
miRNA:   3'- cUCGUGUagCGC---UGCGACuuUGa--CCG- -5'
24870 5' -52.7 NC_005284.1 + 9928 0.67 0.795705
Target:  5'- -cGCGCAgcaGCGGCGUacggcgcuUGAGGC-GGCa -3'
miRNA:   3'- cuCGUGUag-CGCUGCG--------ACUUUGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 10235 0.71 0.565986
Target:  5'- uGGGCACGguggCGCuuGGgGCUGccgcGAACUGGCu -3'
miRNA:   3'- -CUCGUGUa---GCG--CUgCGAC----UUUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 10640 0.68 0.733274
Target:  5'- cGAGCgGCGgcgaagCGCuGCGCgaGGAACUGGUg -3'
miRNA:   3'- -CUCG-UGUa-----GCGcUGCGa-CUUUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 11536 0.71 0.543915
Target:  5'- -uGCGCuAUCGCGACGC-GAucAACaGGCu -3'
miRNA:   3'- cuCGUG-UAGCGCUGCGaCU--UUGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 11567 0.73 0.448935
Target:  5'- gGAGCGCAgugCGCagaucGACGC-GGAGCUcGGCg -3'
miRNA:   3'- -CUCGUGUa--GCG-----CUGCGaCUUUGA-CCG- -5'
24870 5' -52.7 NC_005284.1 + 11813 0.67 0.765134
Target:  5'- gGAGCAgGUCGCG-CGC--GAGCgcGGCu -3'
miRNA:   3'- -CUCGUgUAGCGCuGCGacUUUGa-CCG- -5'
24870 5' -52.7 NC_005284.1 + 11843 0.69 0.667013
Target:  5'- cGAGCAgCGgcUCGCGuuGCaGGccGACUGGCg -3'
miRNA:   3'- -CUCGU-GU--AGCGCugCGaCU--UUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 12630 0.68 0.733274
Target:  5'- aGGGCACGgcggCGauaCGACGCUGcGugUGcGCa -3'
miRNA:   3'- -CUCGUGUa---GC---GCUGCGACuUugAC-CG- -5'
24870 5' -52.7 NC_005284.1 + 14523 0.69 0.644525
Target:  5'- cAGC-CAUCGcCGACGCUGcgGgUGGg -3'
miRNA:   3'- cUCGuGUAGC-GCUGCGACuuUgACCg -5'
24870 5' -52.7 NC_005284.1 + 14608 0.74 0.381769
Target:  5'- gGAGUugGUCGCGACGC----ACgUGGCg -3'
miRNA:   3'- -CUCGugUAGCGCUGCGacuuUG-ACCG- -5'
24870 5' -52.7 NC_005284.1 + 14896 0.66 0.824666
Target:  5'- cAGCGCAaaCGCGA-GCcgUGAGACgugGGCg -3'
miRNA:   3'- cUCGUGUa-GCGCUgCG--ACUUUGa--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.