Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24870 | 5' | -52.7 | NC_005284.1 | + | 7009 | 0.68 | 0.744017 |
Target: 5'- uGGCGC-UCGCcGgGCUGA--CUGGCg -3' miRNA: 3'- cUCGUGuAGCGcUgCGACUuuGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 11843 | 0.69 | 0.667013 |
Target: 5'- cGAGCAgCGgcUCGCGuuGCaGGccGACUGGCg -3' miRNA: 3'- -CUCGU-GU--AGCGCugCGaCU--UUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 51510 | 0.69 | 0.689363 |
Target: 5'- gGGGaCACG-CGgGACGCUGA---UGGCg -3' miRNA: 3'- -CUC-GUGUaGCgCUGCGACUuugACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 30866 | 0.68 | 0.700458 |
Target: 5'- cGGCACAUCuGCGGCaGCgc--ACUGGUc -3' miRNA: 3'- cUCGUGUAG-CGCUG-CGacuuUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 16416 | 0.68 | 0.711482 |
Target: 5'- aAGCGCAUCuaCGGCGCcaagGGAGgUGGUg -3' miRNA: 3'- cUCGUGUAGc-GCUGCGa---CUUUgACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 48154 | 0.68 | 0.711482 |
Target: 5'- aGAGCcCAUUcCGGCGCgc--GCUGGCg -3' miRNA: 3'- -CUCGuGUAGcGCUGCGacuuUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 9406 | 0.68 | 0.722426 |
Target: 5'- aGAGCACcUCGaCGGCaucgUGAAACUcGGCg -3' miRNA: 3'- -CUCGUGuAGC-GCUGcg--ACUUUGA-CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 12630 | 0.68 | 0.733274 |
Target: 5'- aGGGCACGgcggCGauaCGACGCUGcGugUGcGCa -3' miRNA: 3'- -CUCGUGUa---GC---GCUGCGACuUugAC-CG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 10640 | 0.68 | 0.733274 |
Target: 5'- cGAGCgGCGgcgaagCGCuGCGCgaGGAACUGGUg -3' miRNA: 3'- -CUCG-UGUa-----GCGcUGCGa-CUUUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 50249 | 0.69 | 0.667013 |
Target: 5'- -cGCGaacgGCGACGCUGAAGCgucagaaGGCg -3' miRNA: 3'- cuCGUguagCGCUGCGACUUUGa------CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 14523 | 0.69 | 0.644525 |
Target: 5'- cAGC-CAUCGcCGACGCUGcgGgUGGg -3' miRNA: 3'- cUCGuGUAGC-GCUGCGACuuUgACCg -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 10235 | 0.71 | 0.565986 |
Target: 5'- uGGGCACGguggCGCuuGGgGCUGccgcGAACUGGCu -3' miRNA: 3'- -CUCGUGUa---GCG--CUgCGAC----UUUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 16179 | 0.74 | 0.390948 |
Target: 5'- cGGCGCGUCGaUGGCGCUG-GGC-GGCa -3' miRNA: 3'- cUCGUGUAGC-GCUGCGACuUUGaCCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 38949 | 0.74 | 0.39373 |
Target: 5'- cGAGCACuucgucgaccuucGUgCGCGAUGCUGAuccgcgggcugcgcGCUGGCg -3' miRNA: 3'- -CUCGUG-------------UA-GCGCUGCGACUu-------------UGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 47809 | 0.73 | 0.429071 |
Target: 5'- cGAGCGCuUgGCGGCGCUGcGAUgGGUg -3' miRNA: 3'- -CUCGUGuAgCGCUGCGACuUUGaCCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 11567 | 0.73 | 0.448935 |
Target: 5'- gGAGCGCAgugCGCagaucGACGC-GGAGCUcGGCg -3' miRNA: 3'- -CUCGUGUa--GCG-----CUGCGaCUUUGA-CCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 17896 | 0.72 | 0.479654 |
Target: 5'- cGGGCGCAUC-CG-CGCaGcgGCUGGCg -3' miRNA: 3'- -CUCGUGUAGcGCuGCGaCuuUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 17732 | 0.71 | 0.523213 |
Target: 5'- -uGCACGUCGCaGGCGCaggcgcaccggcucgGgcGCUGGCu -3' miRNA: 3'- cuCGUGUAGCG-CUGCGa--------------CuuUGACCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 11536 | 0.71 | 0.543915 |
Target: 5'- -uGCGCuAUCGCGACGC-GAucAACaGGCu -3' miRNA: 3'- cuCGUG-UAGCGCUGCGaCU--UUGaCCG- -5' |
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24870 | 5' | -52.7 | NC_005284.1 | + | 16523 | 0.71 | 0.554918 |
Target: 5'- gGGGCcCAUCGUGGgGCUGGugaaUGGCc -3' miRNA: 3'- -CUCGuGUAGCGCUgCGACUuug-ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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