miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24870 5' -52.7 NC_005284.1 + 20510 1.12 0.001018
Target:  5'- cGAGCACAUCGCGACGCUGAAACUGGCu -3'
miRNA:   3'- -CUCGUGUAGCGCUGCGACUUUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 772 0.76 0.283206
Target:  5'- aAGCAacUCGUGACGUUGGAGCccUGGCa -3'
miRNA:   3'- cUCGUguAGCGCUGCGACUUUG--ACCG- -5'
24870 5' -52.7 NC_005284.1 + 14608 0.74 0.381769
Target:  5'- gGAGUugGUCGCGACGC----ACgUGGCg -3'
miRNA:   3'- -CUCGugUAGCGCUGCGacuuUG-ACCG- -5'
24870 5' -52.7 NC_005284.1 + 16179 0.74 0.390948
Target:  5'- cGGCGCGUCGaUGGCGCUG-GGC-GGCa -3'
miRNA:   3'- cUCGUGUAGC-GCUGCGACuUUGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 38949 0.74 0.39373
Target:  5'- cGAGCACuucgucgaccuucGUgCGCGAUGCUGAuccgcgggcugcgcGCUGGCg -3'
miRNA:   3'- -CUCGUG-------------UA-GCGCUGCGACUu-------------UGACCG- -5'
24870 5' -52.7 NC_005284.1 + 53320 0.73 0.419335
Target:  5'- aAGCGCGcagacuuaaUCGC-ACGCUGcuGCUGGCu -3'
miRNA:   3'- cUCGUGU---------AGCGcUGCGACuuUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 47809 0.73 0.429071
Target:  5'- cGAGCGCuUgGCGGCGCUGcGAUgGGUg -3'
miRNA:   3'- -CUCGUGuAgCGCUGCGACuUUGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 11567 0.73 0.448935
Target:  5'- gGAGCGCAgugCGCagaucGACGC-GGAGCUcGGCg -3'
miRNA:   3'- -CUCGUGUa--GCG-----CUGCGaCUUUGA-CCG- -5'
24870 5' -52.7 NC_005284.1 + 17896 0.72 0.479654
Target:  5'- cGGGCGCAUC-CG-CGCaGcgGCUGGCg -3'
miRNA:   3'- -CUCGUGUAGcGCuGCGaCuuUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 23369 0.72 0.511367
Target:  5'- -cGCACGUCGCc-CGC--GAACUGGCg -3'
miRNA:   3'- cuCGUGUAGCGcuGCGacUUUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 718 0.72 0.511367
Target:  5'- uGGcCGCGUCGUGAuCGUUGu-GCUGGCc -3'
miRNA:   3'- cUC-GUGUAGCGCU-GCGACuuUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 17732 0.71 0.523213
Target:  5'- -uGCACGUCGCaGGCGCaggcgcaccggcucgGgcGCUGGCu -3'
miRNA:   3'- cuCGUGUAGCG-CUGCGa--------------CuuUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 11536 0.71 0.543915
Target:  5'- -uGCGCuAUCGCGACGC-GAucAACaGGCu -3'
miRNA:   3'- cuCGUG-UAGCGCUGCGaCU--UUGaCCG- -5'
24870 5' -52.7 NC_005284.1 + 16523 0.71 0.554918
Target:  5'- gGGGCcCAUCGUGGgGCUGGugaaUGGCc -3'
miRNA:   3'- -CUCGuGUAGCGCUgCGACUuug-ACCG- -5'
24870 5' -52.7 NC_005284.1 + 10235 0.71 0.565986
Target:  5'- uGGGCACGguggCGCuuGGgGCUGccgcGAACUGGCu -3'
miRNA:   3'- -CUCGUGUa---GCG--CUgCGAC----UUUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 32943 0.7 0.57711
Target:  5'- cGGCAcCAUCgcccacgccgGCGGCGCUGgAAGCgccgGGCa -3'
miRNA:   3'- cUCGU-GUAG----------CGCUGCGAC-UUUGa---CCG- -5'
24870 5' -52.7 NC_005284.1 + 15197 0.7 0.592762
Target:  5'- aAGCACuUCGUGACuggggcuuuggcccuGCUGAuucuCUGGCu -3'
miRNA:   3'- cUCGUGuAGCGCUG---------------CGACUuu--GACCG- -5'
24870 5' -52.7 NC_005284.1 + 14523 0.69 0.644525
Target:  5'- cAGC-CAUCGcCGACGCUGcgGgUGGg -3'
miRNA:   3'- cUCGuGUAGC-GCUGCGACuuUgACCg -5'
24870 5' -52.7 NC_005284.1 + 11843 0.69 0.667013
Target:  5'- cGAGCAgCGgcUCGCGuuGCaGGccGACUGGCg -3'
miRNA:   3'- -CUCGU-GU--AGCGCugCGaCU--UUGACCG- -5'
24870 5' -52.7 NC_005284.1 + 50249 0.69 0.667013
Target:  5'- -cGCGaacgGCGACGCUGAAGCgucagaaGGCg -3'
miRNA:   3'- cuCGUguagCGCUGCGACUUUGa------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.