miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24873 3' -51.1 NC_005284.1 + 40181 0.66 0.884649
Target:  5'- cGAGCGUUCGGCGcCGGAacacuuUCGcGCc-- -3'
miRNA:   3'- uUUCGCAAGCCGUaGCUU------AGC-CGuaa -5'
24873 3' -51.1 NC_005284.1 + 36841 0.66 0.868387
Target:  5'- uGAAGCGaucgcCGGCggCGAuuGUCGGCGc- -3'
miRNA:   3'- -UUUCGCaa---GCCGuaGCU--UAGCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 31622 0.67 0.832668
Target:  5'- --uGCGggCGGCGUCGAG--GGCGc- -3'
miRNA:   3'- uuuCGCaaGCCGUAGCUUagCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 33161 0.67 0.832668
Target:  5'- --cGCuGcUCGGCGUCGAGcgCGGCGc- -3'
miRNA:   3'- uuuCG-CaAGCCGUAGCUUa-GCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 50284 0.67 0.823128
Target:  5'- gAGGGUcUUCGGCGuuUCGAGuUCGGCGc- -3'
miRNA:   3'- -UUUCGcAAGCCGU--AGCUU-AGCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 23582 0.67 0.823128
Target:  5'- cGGAGCGggucgagCGGUucAUCGAcgCGGCGg- -3'
miRNA:   3'- -UUUCGCaa-----GCCG--UAGCUuaGCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 36733 0.67 0.811387
Target:  5'- -cAGCGcccgccaccggaUCGGCGUCGAAgcgcUCGGCGa- -3'
miRNA:   3'- uuUCGCa-----------AGCCGUAGCUU----AGCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 37813 0.67 0.803392
Target:  5'- --cGCGUUCGGCGU-GAugCGGCGc- -3'
miRNA:   3'- uuuCGCAAGCCGUAgCUuaGCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 11262 0.68 0.78286
Target:  5'- --cGCGcuaUCGGCAUCGAAUCacaGCAg- -3'
miRNA:   3'- uuuCGCa--AGCCGUAGCUUAGc--CGUaa -5'
24873 3' -51.1 NC_005284.1 + 9938 0.68 0.772328
Target:  5'- -cGGCGUaCGGCGcUUGAggCGGCAg- -3'
miRNA:   3'- uuUCGCAaGCCGU-AGCUuaGCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 21905 0.68 0.761635
Target:  5'- --cGCGUuuUCGGCGUCGc--CGGCGa- -3'
miRNA:   3'- uuuCGCA--AGCCGUAGCuuaGCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 35328 0.68 0.761635
Target:  5'- -uAGCuUUCGGCAUCGAcGUCGGa--- -3'
miRNA:   3'- uuUCGcAAGCCGUAGCU-UAGCCguaa -5'
24873 3' -51.1 NC_005284.1 + 47521 0.69 0.733178
Target:  5'- --cGUGUUCGGCGUCGAGgugccgaccgugcgcUCcGCAUUg -3'
miRNA:   3'- uuuCGCAAGCCGUAGCUU---------------AGcCGUAA- -5'
24873 3' -51.1 NC_005284.1 + 23277 0.69 0.728726
Target:  5'- uAAGGCGcgCGGUGcCGAuAUCGGCGUg -3'
miRNA:   3'- -UUUCGCaaGCCGUaGCU-UAGCCGUAa -5'
24873 3' -51.1 NC_005284.1 + 32815 0.69 0.717525
Target:  5'- --uGCGgggCGGCGUCGGuuaCGGCAa- -3'
miRNA:   3'- uuuCGCaa-GCCGUAGCUua-GCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 6795 0.7 0.660376
Target:  5'- -cGGCGUUUGauGCGUCGA-UCGGCGa- -3'
miRNA:   3'- uuUCGCAAGC--CGUAGCUuAGCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 47717 0.7 0.660376
Target:  5'- cAAGcCGaUCGGCGUCGGugaacGUCGGCGc- -3'
miRNA:   3'- uUUC-GCaAGCCGUAGCU-----UAGCCGUaa -5'
24873 3' -51.1 NC_005284.1 + 27751 0.72 0.534026
Target:  5'- cGAAaCGUcUGGCAUCGAAUCGGCc-- -3'
miRNA:   3'- -UUUcGCAaGCCGUAGCUUAGCCGuaa -5'
24873 3' -51.1 NC_005284.1 + 19422 1.02 0.005765
Target:  5'- uAAAGCGUUCGGCAUCGAAUCGGCAUUc -3'
miRNA:   3'- -UUUCGCAAGCCGUAGCUUAGCCGUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.