miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24874 3' -50.5 NC_005284.1 + 39924 0.66 0.935031
Target:  5'- gGUCggCUGCUGCgUUUUCGAGCcacUCGa -3'
miRNA:   3'- gUAGa-GGUGACGgAAGAGCUUGu--AGC- -5'
24874 3' -50.5 NC_005284.1 + 15575 0.66 0.935031
Target:  5'- cUAUCaggaCGCUgGCUUUCUCG-ACGUCGg -3'
miRNA:   3'- -GUAGag--GUGA-CGGAAGAGCuUGUAGC- -5'
24874 3' -50.5 NC_005284.1 + 6461 0.66 0.935031
Target:  5'- uCAUCUcgCCGCcGCCUUC-CGGAUAgcgcUCGa -3'
miRNA:   3'- -GUAGA--GGUGaCGGAAGaGCUUGU----AGC- -5'
24874 3' -50.5 NC_005284.1 + 35229 0.66 0.929383
Target:  5'- cCGUCUUCGgUGUCguagaUCUCGAGCAg-- -3'
miRNA:   3'- -GUAGAGGUgACGGa----AGAGCUUGUagc -5'
24874 3' -50.5 NC_005284.1 + 13868 0.66 0.929383
Target:  5'- aAUUgaaCAC-GCCUUCUCGAACAagaauUCGc -3'
miRNA:   3'- gUAGag-GUGaCGGAAGAGCUUGU-----AGC- -5'
24874 3' -50.5 NC_005284.1 + 36338 0.66 0.923437
Target:  5'- -uUCUUCAaucGCCUUCUCGAucGCGcCGg -3'
miRNA:   3'- guAGAGGUga-CGGAAGAGCU--UGUaGC- -5'
24874 3' -50.5 NC_005284.1 + 43471 0.66 0.91066
Target:  5'- ---aUCCGCUGCCggaugUUgUCGAGCAUgCGc -3'
miRNA:   3'- guagAGGUGACGG-----AAgAGCUUGUA-GC- -5'
24874 3' -50.5 NC_005284.1 + 52974 0.67 0.881622
Target:  5'- gAUCUCCGC-GCCauccgUUUCGAGCAa-- -3'
miRNA:   3'- gUAGAGGUGaCGGa----AGAGCUUGUagc -5'
24874 3' -50.5 NC_005284.1 + 26737 0.7 0.727476
Target:  5'- aCGUUUCU-CUGCCUcagCUCGAgcuGCGUCGa -3'
miRNA:   3'- -GUAGAGGuGACGGAa--GAGCU---UGUAGC- -5'
24874 3' -50.5 NC_005284.1 + 38038 0.71 0.670467
Target:  5'- gCAUCUUCAUUGCCaUCUgGAucgcuggaucacaGCAUCGu -3'
miRNA:   3'- -GUAGAGGUGACGGaAGAgCU-------------UGUAGC- -5'
24874 3' -50.5 NC_005284.1 + 18413 1.09 0.003093
Target:  5'- cCAUCUCCACUGCCUUCUCGAACAUCGu -3'
miRNA:   3'- -GUAGAGGUGACGGAAGAGCUUGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.