miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24884 5' -53.1 NC_005284.1 + 249 0.66 0.845647
Target:  5'- aGGGCuGaCAGAGGccgcuGUCGCGGCgcaagaugcgcugCCUGAu -3'
miRNA:   3'- -CCUG-C-GUCUUUuu---CAGCGCCG-------------GGACU- -5'
24884 5' -53.1 NC_005284.1 + 22133 0.66 0.809907
Target:  5'- cGAUGCGGGAGAGGcggcagCGUGGCgCUa- -3'
miRNA:   3'- cCUGCGUCUUUUUCa-----GCGCCGgGAcu -5'
24884 5' -53.1 NC_005284.1 + 2617 0.67 0.787428
Target:  5'- gGGuACGCgAGAAAGcuccGGUCGgcgggugugcucauCGGCCUUGAg -3'
miRNA:   3'- -CC-UGCG-UCUUUU----UCAGC--------------GCCGGGACU- -5'
24884 5' -53.1 NC_005284.1 + 14600 0.67 0.749486
Target:  5'- aGGACGcCGGAGuuGGUCGCGacGCaCgUGGc -3'
miRNA:   3'- -CCUGC-GUCUUuuUCAGCGC--CG-GgACU- -5'
24884 5' -53.1 NC_005284.1 + 13728 0.67 0.749486
Target:  5'- aGGCGCAGGAAA--UCGCaacGGCCCc-- -3'
miRNA:   3'- cCUGCGUCUUUUucAGCG---CCGGGacu -5'
24884 5' -53.1 NC_005284.1 + 37943 0.68 0.728241
Target:  5'- -uGCGCuc--GGAGUCGUGGCCUUGu -3'
miRNA:   3'- ccUGCGucuuUUUCAGCGCCGGGACu -5'
24884 5' -53.1 NC_005284.1 + 3502 0.68 0.717465
Target:  5'- aGGACGCcuuGAAAG-CGUGGCUCUa- -3'
miRNA:   3'- -CCUGCGucuUUUUCaGCGCCGGGAcu -5'
24884 5' -53.1 NC_005284.1 + 43968 0.68 0.705512
Target:  5'- gGGA-GCAGAAGGAGcUCGCGggaugacGCCCUcGGg -3'
miRNA:   3'- -CCUgCGUCUUUUUC-AGCGC-------CGGGA-CU- -5'
24884 5' -53.1 NC_005284.1 + 13975 0.69 0.673612
Target:  5'- aGGACGCucGAAAAAGUgauggCGCGGCUg--- -3'
miRNA:   3'- -CCUGCGu-CUUUUUCA-----GCGCCGGgacu -5'
24884 5' -53.1 NC_005284.1 + 43271 0.71 0.562626
Target:  5'- uGGGCaGCucGAGGAGGUCGCGGacggCCUGc -3'
miRNA:   3'- -CCUG-CGu-CUUUUUCAGCGCCg---GGACu -5'
24884 5' -53.1 NC_005284.1 + 19054 0.74 0.407451
Target:  5'- cGGuCGCgaAGAAAGucgaaacAGUCGCGGCCCa-- -3'
miRNA:   3'- -CCuGCG--UCUUUU-------UCAGCGCCGGGacu -5'
24884 5' -53.1 NC_005284.1 + 11545 1.12 0.001118
Target:  5'- cGGACGCAGAAAAAGUCGCGGCCCUGAu -3'
miRNA:   3'- -CCUGCGUCUUUUUCAGCGCCGGGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.