miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24903 5' -56.7 NC_005284.1 + 15264 0.67 0.555443
Target:  5'- --aCGCGAGCGCGAacUGGUcggucggcacgGCCGCAa- -3'
miRNA:   3'- augGUGCUCGUGCU--AUCG-----------CGGCGUga -5'
24903 5' -56.7 NC_005284.1 + 15761 0.7 0.376397
Target:  5'- gGCCGacagcuGCACGAcGGUGCUGCGCUa -3'
miRNA:   3'- aUGGUgcu---CGUGCUaUCGCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 15985 0.72 0.287821
Target:  5'- aGCCGgGAaucaGCAcCGAUAGCGCgCGCACc -3'
miRNA:   3'- aUGGUgCU----CGU-GCUAUCGCG-GCGUGa -5'
24903 5' -56.7 NC_005284.1 + 16072 0.71 0.333968
Target:  5'- aAgCGCGGGgggcucuucaaCACGAUucucGGCGCCGCACUc -3'
miRNA:   3'- aUgGUGCUC-----------GUGCUA----UCGCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 16115 0.67 0.544656
Target:  5'- uUGCCGuuGGCGCGGUGGCGacguucgguuUCGCGCa -3'
miRNA:   3'- -AUGGUgcUCGUGCUAUCGC----------GGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 17820 0.68 0.451428
Target:  5'- cGCC-CGAGC-CGGU-GCGCCuGCGCc -3'
miRNA:   3'- aUGGuGCUCGuGCUAuCGCGG-CGUGa -5'
24903 5' -56.7 NC_005284.1 + 19798 0.69 0.412862
Target:  5'- -uCCGuCGAGCAUGAggcGCGCCGCu-- -3'
miRNA:   3'- auGGU-GCUCGUGCUau-CGCGGCGuga -5'
24903 5' -56.7 NC_005284.1 + 21558 0.66 0.610142
Target:  5'- uUGCCgACGAGCaggccGCGcgGGCGUucgaCGCGCa -3'
miRNA:   3'- -AUGG-UGCUCG-----UGCuaUCGCG----GCGUGa -5'
24903 5' -56.7 NC_005284.1 + 21607 0.66 0.610142
Target:  5'- aGCguUGGGCAaGAUcucgcGCGCCGCGCUc -3'
miRNA:   3'- aUGguGCUCGUgCUAu----CGCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 21658 0.67 0.512734
Target:  5'- cGCCGC--GCACGAUGcCGCCGCGu- -3'
miRNA:   3'- aUGGUGcuCGUGCUAUcGCGGCGUga -5'
24903 5' -56.7 NC_005284.1 + 21762 0.67 0.555443
Target:  5'- uUGCCGCuGGCACug-AGCGgCUGCGCg -3'
miRNA:   3'- -AUGGUGcUCGUGcuaUCGC-GGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 21844 0.71 0.302623
Target:  5'- cGCCGCcGGCguggGCGAUGGUGCCGC-Cg -3'
miRNA:   3'- aUGGUGcUCG----UGCUAUCGCGGCGuGa -5'
24903 5' -56.7 NC_005284.1 + 21908 0.68 0.481609
Target:  5'- cGCCgGCGGcGCugGA-AGCGCCGgGCa -3'
miRNA:   3'- aUGG-UGCU-CGugCUaUCGCGGCgUGa -5'
24903 5' -56.7 NC_005284.1 + 22253 0.71 0.325914
Target:  5'- -uUCGCGGGCGgGGcGGCGCUGUACUu -3'
miRNA:   3'- auGGUGCUCGUgCUaUCGCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 22865 0.66 0.610142
Target:  5'- gGCgGCGGGaaggGCGucgAGCGCCGCgaGCUg -3'
miRNA:   3'- aUGgUGCUCg---UGCua-UCGCGGCG--UGA- -5'
24903 5' -56.7 NC_005284.1 + 26650 0.67 0.533937
Target:  5'- cUGCUACGuGaUGCGAUAGaacgccucuuCGCCGCGCUc -3'
miRNA:   3'- -AUGGUGCuC-GUGCUAUC----------GCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 27167 0.66 0.599128
Target:  5'- uUGCU-CGAGUAUGG-GGCGCCGCuACg -3'
miRNA:   3'- -AUGGuGCUCGUGCUaUCGCGGCG-UGa -5'
24903 5' -56.7 NC_005284.1 + 27459 0.66 0.599128
Target:  5'- -gUCAgGGGCGCGAUAGuUGgUGCACa -3'
miRNA:   3'- auGGUgCUCGUGCUAUC-GCgGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 28014 0.68 0.491886
Target:  5'- -cCCGCGGGCgacAUGGUugcAGCGCCaGCACc -3'
miRNA:   3'- auGGUGCUCG---UGCUA---UCGCGG-CGUGa -5'
24903 5' -56.7 NC_005284.1 + 30361 0.68 0.502263
Target:  5'- gGCgAuCGAGCGCGAgGGCGauGCGCUc -3'
miRNA:   3'- aUGgU-GCUCGUGCUaUCGCggCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.