miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24903 5' -56.7 NC_005284.1 + 451 0.66 0.599128
Target:  5'- gACCcgGCGAGC-CGGcAGCGCCuggucgGCGCa -3'
miRNA:   3'- aUGG--UGCUCGuGCUaUCGCGG------CGUGa -5'
24903 5' -56.7 NC_005284.1 + 1172 1.06 0.000944
Target:  5'- gUACCACGAGCACGAUAGCGCCGCACUg -3'
miRNA:   3'- -AUGGUGCUCGUGCUAUCGCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 1229 0.7 0.385307
Target:  5'- gUACuCAUcgacaaugGAGCACGAUGGCGaCGCGCc -3'
miRNA:   3'- -AUG-GUG--------CUCGUGCUAUCGCgGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 1259 0.71 0.333968
Target:  5'- gACUGCGGGCGCGAacaucgaGGgGCCGUGCUu -3'
miRNA:   3'- aUGGUGCUCGUGCUa------UCgCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 4483 0.69 0.431893
Target:  5'- gGCuCGCG-GCgGCGGUAGCGCCGaACUc -3'
miRNA:   3'- aUG-GUGCuCG-UGCUAUCGCGGCgUGA- -5'
24903 5' -56.7 NC_005284.1 + 7893 0.68 0.491886
Target:  5'- --gCGCGAGCcgACGGUcGGCGaCCGCAUg -3'
miRNA:   3'- augGUGCUCG--UGCUA-UCGC-GGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 9358 0.67 0.566292
Target:  5'- aGCgACGGGCGCGAgcGCGaggcuUGCGCa -3'
miRNA:   3'- aUGgUGCUCGUGCUauCGCg----GCGUGa -5'
24903 5' -56.7 NC_005284.1 + 9660 0.7 0.394356
Target:  5'- aGCuCGCGGGCAUGcgAGCGauGCGCg -3'
miRNA:   3'- aUG-GUGCUCGUGCuaUCGCggCGUGa -5'
24903 5' -56.7 NC_005284.1 + 9667 0.71 0.325914
Target:  5'- cGCCGCGgcAGCGCGAUcGCcCUGCGCUu -3'
miRNA:   3'- aUGGUGC--UCGUGCUAuCGcGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 9838 0.67 0.527542
Target:  5'- cAUCACGGGCacgcccuacgcgGCGAUcaucgcucgcgagacGGCaGCCGCACa -3'
miRNA:   3'- aUGGUGCUCG------------UGCUA---------------UCG-CGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 9990 0.66 0.577195
Target:  5'- cUGCUgcGCGAGCGCGAgcGaCGCuucggCGCGCUg -3'
miRNA:   3'- -AUGG--UGCUCGUGCUauC-GCG-----GCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 10128 0.67 0.566292
Target:  5'- cGCgGCGAcgGCGCaGAcGGCGCuCGCGCg -3'
miRNA:   3'- aUGgUGCU--CGUG-CUaUCGCG-GCGUGa -5'
24903 5' -56.7 NC_005284.1 + 10158 0.71 0.318006
Target:  5'- cGCCGCGGuCGCGGU--CGCCGCGCg -3'
miRNA:   3'- aUGGUGCUcGUGCUAucGCGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 10214 0.68 0.491886
Target:  5'- gUACgCGCGAGCGCcgucuGCGCCGuCGCc -3'
miRNA:   3'- -AUG-GUGCUCGUGcuau-CGCGGC-GUGa -5'
24903 5' -56.7 NC_005284.1 + 10230 0.75 0.189383
Target:  5'- gACCGUGGGCACGGUGGCGCUugGgGCUg -3'
miRNA:   3'- aUGGUGCUCGUGCUAUCGCGG--CgUGA- -5'
24903 5' -56.7 NC_005284.1 + 10635 0.73 0.228224
Target:  5'- gGCgACGAGCggcgGCGA-AGCGCUGCGCg -3'
miRNA:   3'- aUGgUGCUCG----UGCUaUCGCGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 10677 0.71 0.318006
Target:  5'- cGCCGCGGGCGCGAUcgacacGGCggGCCuCGCUu -3'
miRNA:   3'- aUGGUGCUCGUGCUA------UCG--CGGcGUGA- -5'
24903 5' -56.7 NC_005284.1 + 11237 0.71 0.333968
Target:  5'- gGCCGCG-GCGCGAgcuGCGUCaGCAUUg -3'
miRNA:   3'- aUGGUGCuCGUGCUau-CGCGG-CGUGA- -5'
24903 5' -56.7 NC_005284.1 + 12897 0.66 0.577195
Target:  5'- -uCCGCGGGCGCGA-AGCgGCgGCGu- -3'
miRNA:   3'- auGGUGCUCGUGCUaUCG-CGgCGUga -5'
24903 5' -56.7 NC_005284.1 + 14600 0.67 0.512734
Target:  5'- cACC-CGcAGCgucgGCGAUGGCuGCUGCGCg -3'
miRNA:   3'- aUGGuGC-UCG----UGCUAUCG-CGGCGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.