miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24903 5' -56.7 NC_005284.1 + 21658 0.67 0.512734
Target:  5'- cGCCGC--GCACGAUGcCGCCGCGu- -3'
miRNA:   3'- aUGGUGcuCGUGCUAUcGCGGCGUga -5'
24903 5' -56.7 NC_005284.1 + 4483 0.69 0.431893
Target:  5'- gGCuCGCG-GCgGCGGUAGCGCCGaACUc -3'
miRNA:   3'- aUG-GUGCuCG-UGCUAUCGCGGCgUGA- -5'
24903 5' -56.7 NC_005284.1 + 31728 0.69 0.4416
Target:  5'- aUACCAUGcucgcucccgcAGCcaGCGAUAGCGCUcuGCGCa -3'
miRNA:   3'- -AUGGUGC-----------UCG--UGCUAUCGCGG--CGUGa -5'
24903 5' -56.7 NC_005284.1 + 45558 0.68 0.461375
Target:  5'- cGCCGCGuGGCGCGuc-GC-CCGCGCa -3'
miRNA:   3'- aUGGUGC-UCGUGCuauCGcGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 52607 0.68 0.461375
Target:  5'- gACCAaaGAGCGCGGgcugaauuuGcCGCCGCACg -3'
miRNA:   3'- aUGGUg-CUCGUGCUau-------C-GCGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 45866 0.68 0.481609
Target:  5'- uUGCUACgugGAGCGCGAagccacuGCuGCCGCGCa -3'
miRNA:   3'- -AUGGUG---CUCGUGCUau-----CG-CGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 7893 0.68 0.491886
Target:  5'- --gCGCGAGCcgACGGUcGGCGaCCGCAUg -3'
miRNA:   3'- augGUGCUCG--UGCUA-UCGC-GGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 28014 0.68 0.491886
Target:  5'- -cCCGCGGGCgacAUGGUugcAGCGCCaGCACc -3'
miRNA:   3'- auGGUGCUCG---UGCUA---UCGCGG-CGUGa -5'
24903 5' -56.7 NC_005284.1 + 30361 0.68 0.502263
Target:  5'- gGCgAuCGAGCGCGAgGGCGauGCGCUc -3'
miRNA:   3'- aUGgU-GCUCGUGCUaUCGCggCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 9660 0.7 0.394356
Target:  5'- aGCuCGCGGGCAUGcgAGCGauGCGCg -3'
miRNA:   3'- aUG-GUGCUCGUGCuaUCGCggCGUGa -5'
24903 5' -56.7 NC_005284.1 + 32636 0.7 0.376397
Target:  5'- cGCCGCucGUuCGAUAGCGCCaCGCUg -3'
miRNA:   3'- aUGGUGcuCGuGCUAUCGCGGcGUGA- -5'
24903 5' -56.7 NC_005284.1 + 15761 0.7 0.376397
Target:  5'- gGCCGacagcuGCACGAcGGUGCUGCGCUa -3'
miRNA:   3'- aUGGUgcu---CGUGCUaUCGCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 49372 0.76 0.156474
Target:  5'- aGCUucgcCGAGCGCGAgcuggcGCGCCGCACg -3'
miRNA:   3'- aUGGu---GCUCGUGCUau----CGCGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 10230 0.75 0.189383
Target:  5'- gACCGUGGGCACGGUGGCGCUugGgGCUg -3'
miRNA:   3'- aUGGUGCUCGUGCUAUCGCGG--CgUGA- -5'
24903 5' -56.7 NC_005284.1 + 10635 0.73 0.228224
Target:  5'- gGCgACGAGCggcgGCGA-AGCGCUGCGCg -3'
miRNA:   3'- aUGgUGCUCG----UGCUaUCGCGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 21844 0.71 0.302623
Target:  5'- cGCCGCcGGCguggGCGAUGGUGCCGC-Cg -3'
miRNA:   3'- aUGGUGcUCG----UGCUAUCGCGGCGuGa -5'
24903 5' -56.7 NC_005284.1 + 10677 0.71 0.318006
Target:  5'- cGCCGCGGGCGCGAUcgacacGGCggGCCuCGCUu -3'
miRNA:   3'- aUGGUGCUCGUGCUA------UCG--CGGcGUGA- -5'
24903 5' -56.7 NC_005284.1 + 22253 0.71 0.325914
Target:  5'- -uUCGCGGGCGgGGcGGCGCUGUACUu -3'
miRNA:   3'- auGGUGCUCGUgCUaUCGCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 1259 0.71 0.333968
Target:  5'- gACUGCGGGCGCGAacaucgaGGgGCCGUGCUu -3'
miRNA:   3'- aUGGUGCUCGUGCUa------UCgCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 16072 0.71 0.333968
Target:  5'- aAgCGCGGGgggcucuucaaCACGAUucucGGCGCCGCACUc -3'
miRNA:   3'- aUgGUGCUC-----------GUGCUA----UCGCGGCGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.