miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24904 3' -52.3 NC_005284.1 + 34587 0.71 0.572331
Target:  5'- uUCuCGGCGucgcuguAugGCGAAUcaGCGUGAAUCu -3'
miRNA:   3'- uAG-GCCGU-------UugCGCUUA--CGCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 10084 0.7 0.584718
Target:  5'- --gCGGCGAcCGCGAccGCGgCGggUCu -3'
miRNA:   3'- uagGCCGUUuGCGCUuaCGC-GCuuAG- -5'
24904 3' -52.3 NC_005284.1 + 38997 0.7 0.596025
Target:  5'- -gCUGGCGAcgcaACGC--AUGCGCGAGUUg -3'
miRNA:   3'- uaGGCCGUU----UGCGcuUACGCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 18460 0.69 0.663056
Target:  5'- uAUCagGGCAAguaccucGCGCGggUGCGCGc--- -3'
miRNA:   3'- -UAGg-CCGUU-------UGCGCuuACGCGCuuag -5'
24904 3' -52.3 NC_005284.1 + 4159 0.69 0.686775
Target:  5'- aGUCUGGUGacAugGCGAAcGaCGUGAAUCg -3'
miRNA:   3'- -UAGGCCGU--UugCGCUUaC-GCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 30418 0.68 0.708025
Target:  5'- cGUCC-GCGuGCGCGAcgGCgaggugcuguuucGCGAGUCg -3'
miRNA:   3'- -UAGGcCGUuUGCGCUuaCG-------------CGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 19461 0.68 0.742041
Target:  5'- uUgCGGCAGGCGCuGAucgGUGCGggcUGGAUCa -3'
miRNA:   3'- uAgGCCGUUUGCG-CU---UACGC---GCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 51253 0.68 0.731175
Target:  5'- uUCUGGCGAGCGagccacGCGCGAAg- -3'
miRNA:   3'- uAGGCCGUUUGCgcuua-CGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 9362 0.68 0.731175
Target:  5'- -aCgGGCGcgAGCGCGAGgcuUGCGCaggGGAUCa -3'
miRNA:   3'- uaGgCCGU--UUGCGCUU---ACGCG---CUUAG- -5'
24904 3' -52.3 NC_005284.1 + 11327 0.68 0.730082
Target:  5'- cAUCCGGCAGcggauCGCGcAAcUGCGCGucgaggcGGUCg -3'
miRNA:   3'- -UAGGCCGUUu----GCGC-UU-ACGCGC-------UUAG- -5'
24904 3' -52.3 NC_005284.1 + 42247 0.68 0.720202
Target:  5'- uUCCcGCAGACgagcguuuggGCGAGUGUGCGccGGUCg -3'
miRNA:   3'- uAGGcCGUUUG----------CGCUUACGCGC--UUAG- -5'
24904 3' -52.3 NC_005284.1 + 9484 0.68 0.709136
Target:  5'- aGUCgCGGCGAcgcagGCgGCGAcaGCGUGggUCg -3'
miRNA:   3'- -UAG-GCCGUU-----UG-CGCUuaCGCGCuuAG- -5'
24904 3' -52.3 NC_005284.1 + 53076 0.67 0.804309
Target:  5'- --gCGGCAAACGCG-AUGCccaccGCGAu-- -3'
miRNA:   3'- uagGCCGUUUGCGCuUACG-----CGCUuag -5'
24904 3' -52.3 NC_005284.1 + 7671 0.66 0.814083
Target:  5'- -gUCGGCGAACGUGA---CGCGGAa- -3'
miRNA:   3'- uaGGCCGUUUGCGCUuacGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 21700 0.66 0.814083
Target:  5'- -cUCGGCGucgAGCGCGGc-GCGCGAGaUCu -3'
miRNA:   3'- uaGGCCGU---UUGCGCUuaCGCGCUU-AG- -5'
24904 3' -52.3 NC_005284.1 + 16034 0.66 0.842136
Target:  5'- --aCGGCGAACGUGAGgccggcgucGCGCGccgacGUCa -3'
miRNA:   3'- uagGCCGUUUGCGCUUa--------CGCGCu----UAG- -5'
24904 3' -52.3 NC_005284.1 + 12899 0.66 0.842136
Target:  5'- aGUCC-GCGGGCGCGAA-GCgGCGGcGUCc -3'
miRNA:   3'- -UAGGcCGUUUGCGCUUaCG-CGCU-UAG- -5'
24904 3' -52.3 NC_005284.1 + 33544 0.66 0.850151
Target:  5'- -gCCGGCcGACgGCGcGUGUaagcacuGCGGAUCg -3'
miRNA:   3'- uaGGCCGuUUG-CGCuUACG-------CGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 18102 0.66 0.851029
Target:  5'- -cUCGGCGAGCGUGAccGUGuCGCc-GUCg -3'
miRNA:   3'- uaGGCCGUUUGCGCU--UAC-GCGcuUAG- -5'
24904 3' -52.3 NC_005284.1 + 50204 0.75 0.350461
Target:  5'- gGUCCauGGCGAACGcCGcGUGCGCG-AUCg -3'
miRNA:   3'- -UAGG--CCGUUUGC-GCuUACGCGCuUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.