miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24904 3' -52.3 NC_005284.1 + 21334 0.67 0.804309
Target:  5'- -aCUGGCgGGGCGCGuGUcGCGCG-AUCa -3'
miRNA:   3'- uaGGCCG-UUUGCGCuUA-CGCGCuUAG- -5'
24904 3' -52.3 NC_005284.1 + 9362 0.68 0.731175
Target:  5'- -aCgGGCGcgAGCGCGAGgcuUGCGCaggGGAUCa -3'
miRNA:   3'- uaGgCCGU--UUGCGCUU---ACGCG---CUUAG- -5'
24904 3' -52.3 NC_005284.1 + 51253 0.68 0.731175
Target:  5'- uUCUGGCGAGCGagccacGCGCGAAg- -3'
miRNA:   3'- uAGGCCGUUUGCgcuua-CGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 19461 0.68 0.742041
Target:  5'- uUgCGGCAGGCGCuGAucgGUGCGggcUGGAUCa -3'
miRNA:   3'- uAgGCCGUUUGCG-CU---UACGC---GCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 27674 0.68 0.752789
Target:  5'- -aCgGGCcGGCGUGGc-GCGCGggUCg -3'
miRNA:   3'- uaGgCCGuUUGCGCUuaCGCGCuuAG- -5'
24904 3' -52.3 NC_005284.1 + 16021 0.67 0.771796
Target:  5'- cAUCCGGuCGGGCGCGAcgagauccgcauUGCGCcgguAAUCg -3'
miRNA:   3'- -UAGGCC-GUUUGCGCUu-----------ACGCGc---UUAG- -5'
24904 3' -52.3 NC_005284.1 + 54459 0.67 0.773879
Target:  5'- aGUCCGacGCGGuGCGCGGcaaucgucAUGCGCGAGg- -3'
miRNA:   3'- -UAGGC--CGUU-UGCGCU--------UACGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 26362 0.67 0.784195
Target:  5'- -gCCGGC--GCGCcGGUcuacaacacGCGCGAAUCa -3'
miRNA:   3'- uaGGCCGuuUGCGcUUA---------CGCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 15443 0.67 0.802331
Target:  5'- cGUCCauGGCGugcacgacugcuACGCGAucGUGCGCGAc-- -3'
miRNA:   3'- -UAGG--CCGUu-----------UGCGCU--UACGCGCUuag -5'
24904 3' -52.3 NC_005284.1 + 11327 0.68 0.730082
Target:  5'- cAUCCGGCAGcggauCGCGcAAcUGCGCGucgaggcGGUCg -3'
miRNA:   3'- -UAGGCCGUUu----GCGC-UU-ACGCGC-------UUAG- -5'
24904 3' -52.3 NC_005284.1 + 42247 0.68 0.720202
Target:  5'- uUCCcGCAGACgagcguuuggGCGAGUGUGCGccGGUCg -3'
miRNA:   3'- uAGGcCGUUUG----------CGCUUACGCGC--UUAG- -5'
24904 3' -52.3 NC_005284.1 + 9484 0.68 0.709136
Target:  5'- aGUCgCGGCGAcgcagGCgGCGAcaGCGUGggUCg -3'
miRNA:   3'- -UAG-GCCGUU-----UG-CGCUuaCGCGCuuAG- -5'
24904 3' -52.3 NC_005284.1 + 8442 0.73 0.434459
Target:  5'- gGUCCGGCGAGCccGCGAcgGCG-GAGg- -3'
miRNA:   3'- -UAGGCCGUUUG--CGCUuaCGCgCUUag -5'
24904 3' -52.3 NC_005284.1 + 12345 0.71 0.528998
Target:  5'- gAUCCGGCuucGCGCGAuucGCcGCGggUg -3'
miRNA:   3'- -UAGGCCGuu-UGCGCUua-CG-CGCuuAg -5'
24904 3' -52.3 NC_005284.1 + 34587 0.71 0.572331
Target:  5'- uUCuCGGCGucgcuguAugGCGAAUcaGCGUGAAUCu -3'
miRNA:   3'- uAG-GCCGU-------UugCGCUUA--CGCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 10084 0.7 0.584718
Target:  5'- --gCGGCGAcCGCGAccGCGgCGggUCu -3'
miRNA:   3'- uagGCCGUUuGCGCUuaCGC-GCuuAG- -5'
24904 3' -52.3 NC_005284.1 + 38997 0.7 0.596025
Target:  5'- -gCUGGCGAcgcaACGC--AUGCGCGAGUUg -3'
miRNA:   3'- uaGGCCGUU----UGCGcuUACGCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 18460 0.69 0.663056
Target:  5'- uAUCagGGCAAguaccucGCGCGggUGCGCGc--- -3'
miRNA:   3'- -UAGg-CCGUU-------UGCGCuuACGCGCuuag -5'
24904 3' -52.3 NC_005284.1 + 4159 0.69 0.686775
Target:  5'- aGUCUGGUGacAugGCGAAcGaCGUGAAUCg -3'
miRNA:   3'- -UAGGCCGU--UugCGCUUaC-GCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 30418 0.68 0.708025
Target:  5'- cGUCC-GCGuGCGCGAcgGCgaggugcuguuucGCGAGUCg -3'
miRNA:   3'- -UAGGcCGUuUGCGCUuaCG-------------CGCUUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.