miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24904 3' -52.3 NC_005284.1 + 3993 1.09 0.001808
Target:  5'- aAUCCGGCAAACGCGAAUGCGCGAAUCg -3'
miRNA:   3'- -UAGGCCGUUUGCGCUUACGCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 4159 0.69 0.686775
Target:  5'- aGUCUGGUGacAugGCGAAcGaCGUGAAUCg -3'
miRNA:   3'- -UAGGCCGU--UugCGCUUaC-GCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 4800 0.66 0.851029
Target:  5'- -cCCGGCAugaGCaAAU-CGCGAAUCg -3'
miRNA:   3'- uaGGCCGUuugCGcUUAcGCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 4982 0.67 0.760236
Target:  5'- -gCCGGCGcaucgucgagaucuGACGCGAcgccuugaacagAUGUGCG-AUCg -3'
miRNA:   3'- uaGGCCGU--------------UUGCGCU------------UACGCGCuUAG- -5'
24904 3' -52.3 NC_005284.1 + 5486 0.72 0.496506
Target:  5'- --aCGGCAAGCGCGAG-GCGUuccuccgcacGGAUCg -3'
miRNA:   3'- uagGCCGUUUGCGCUUaCGCG----------CUUAG- -5'
24904 3' -52.3 NC_005284.1 + 6406 0.67 0.773879
Target:  5'- cAUCgCGGCGAAauCGAAUGCGCa---- -3'
miRNA:   3'- -UAG-GCCGUUUgcGCUUACGCGcuuag -5'
24904 3' -52.3 NC_005284.1 + 7671 0.66 0.814083
Target:  5'- -gUCGGCGAACGUGA---CGCGGAa- -3'
miRNA:   3'- uaGGCCGUUUGCGCUuacGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 8366 0.66 0.833007
Target:  5'- cAUgCGGCGAugauCGCGGcgGCgGCGuuUCa -3'
miRNA:   3'- -UAgGCCGUUu---GCGCUuaCG-CGCuuAG- -5'
24904 3' -52.3 NC_005284.1 + 8442 0.73 0.434459
Target:  5'- gGUCCGGCGAGCccGCGAcgGCG-GAGg- -3'
miRNA:   3'- -UAGGCCGUUUG--CGCUuaCGCgCUUag -5'
24904 3' -52.3 NC_005284.1 + 9362 0.68 0.731175
Target:  5'- -aCgGGCGcgAGCGCGAGgcuUGCGCaggGGAUCa -3'
miRNA:   3'- uaGgCCGU--UUGCGCUU---ACGCG---CUUAG- -5'
24904 3' -52.3 NC_005284.1 + 9484 0.68 0.709136
Target:  5'- aGUCgCGGCGAcgcagGCgGCGAcaGCGUGggUCg -3'
miRNA:   3'- -UAG-GCCGUU-----UG-CGCUuaCGCGCuuAG- -5'
24904 3' -52.3 NC_005284.1 + 9665 0.66 0.851029
Target:  5'- -gCgGGCA--UGCGAgcgAUGCGCGAAa- -3'
miRNA:   3'- uaGgCCGUuuGCGCU---UACGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 10084 0.7 0.584718
Target:  5'- --gCGGCGAcCGCGAccGCGgCGggUCu -3'
miRNA:   3'- uagGCCGUUuGCGCUuaCGC-GCuuAG- -5'
24904 3' -52.3 NC_005284.1 + 10897 0.66 0.842136
Target:  5'- -gCCGaGUAcgaAGCGCGGAcgaaggGCGCGAAUg -3'
miRNA:   3'- uaGGC-CGU---UUGCGCUUa-----CGCGCUUAg -5'
24904 3' -52.3 NC_005284.1 + 11020 0.68 0.742041
Target:  5'- cGUCCGGCGAcgaggccggccAUGCGGGccUGCGC--AUCa -3'
miRNA:   3'- -UAGGCCGUU-----------UGCGCUU--ACGCGcuUAG- -5'
24904 3' -52.3 NC_005284.1 + 11327 0.68 0.730082
Target:  5'- cAUCCGGCAGcggauCGCGcAAcUGCGCGucgaggcGGUCg -3'
miRNA:   3'- -UAGGCCGUUu----GCGC-UU-ACGCGC-------UUAG- -5'
24904 3' -52.3 NC_005284.1 + 12149 0.66 0.851029
Target:  5'- gGUgCGGCAAGCGCGGcUGU-CGGcUCg -3'
miRNA:   3'- -UAgGCCGUUUGCGCUuACGcGCUuAG- -5'
24904 3' -52.3 NC_005284.1 + 12345 0.71 0.528998
Target:  5'- gAUCCGGCuucGCGCGAuucGCcGCGggUg -3'
miRNA:   3'- -UAGGCCGuu-UGCGCUua-CG-CGCuuAg -5'
24904 3' -52.3 NC_005284.1 + 12423 0.68 0.742041
Target:  5'- --gCGGCGAaucGCGCGAA-GC-CGGAUCg -3'
miRNA:   3'- uagGCCGUU---UGCGCUUaCGcGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 12899 0.66 0.842136
Target:  5'- aGUCC-GCGGGCGCGAA-GCgGCGGcGUCc -3'
miRNA:   3'- -UAGGcCGUUUGCGCUUaCG-CGCU-UAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.