Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24904 | 3' | -52.3 | NC_005284.1 | + | 3993 | 1.09 | 0.001808 |
Target: 5'- aAUCCGGCAAACGCGAAUGCGCGAAUCg -3' miRNA: 3'- -UAGGCCGUUUGCGCUUACGCGCUUAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 50204 | 0.75 | 0.350461 |
Target: 5'- gGUCCauGGCGAACGcCGcGUGCGCG-AUCg -3' miRNA: 3'- -UAGG--CCGUUUGC-GCuUACGCGCuUAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 32850 | 0.74 | 0.395679 |
Target: 5'- -aCCGGCAGaggcGCGCGA--GCGCGAcgAUCc -3' miRNA: 3'- uaGGCCGUU----UGCGCUuaCGCGCU--UAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 8442 | 0.73 | 0.434459 |
Target: 5'- gGUCCGGCGAGCccGCGAcgGCG-GAGg- -3' miRNA: 3'- -UAGGCCGUUUG--CGCUuaCGCgCUUag -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 34718 | 0.73 | 0.464944 |
Target: 5'- cUgCGGCAGACGUGGAggGCcGCGAAUa -3' miRNA: 3'- uAgGCCGUUUGCGCUUa-CG-CGCUUAg -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 5486 | 0.72 | 0.496506 |
Target: 5'- --aCGGCAAGCGCGAG-GCGUuccuccgcacGGAUCg -3' miRNA: 3'- uagGCCGUUUGCGCUUaCGCG----------CUUAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 12345 | 0.71 | 0.528998 |
Target: 5'- gAUCCGGCuucGCGCGAuucGCcGCGggUg -3' miRNA: 3'- -UAGGCCGuu-UGCGCUua-CG-CGCuuAg -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 45676 | 0.71 | 0.544431 |
Target: 5'- cGUCCGGCAGcguguaugugaucagGCGUcgauagccGAGUGCGCGGGc- -3' miRNA: 3'- -UAGGCCGUU---------------UGCG--------CUUACGCGCUUag -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 34587 | 0.71 | 0.572331 |
Target: 5'- uUCuCGGCGucgcuguAugGCGAAUcaGCGUGAAUCu -3' miRNA: 3'- uAG-GCCGU-------UugCGCUUA--CGCGCUUAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 10084 | 0.7 | 0.584718 |
Target: 5'- --gCGGCGAcCGCGAccGCGgCGggUCu -3' miRNA: 3'- uagGCCGUUuGCGCUuaCGC-GCuuAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 38997 | 0.7 | 0.596025 |
Target: 5'- -gCUGGCGAcgcaACGC--AUGCGCGAGUUg -3' miRNA: 3'- uaGGCCGUU----UGCGcuUACGCGCUUAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 43967 | 0.7 | 0.607363 |
Target: 5'- aGUCCGGCcgGAGCGUuucgcacacGAc-GCGCGGAUCa -3' miRNA: 3'- -UAGGCCG--UUUGCG---------CUuaCGCGCUUAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 21619 | 0.7 | 0.607363 |
Target: 5'- -gUCGGCAAGC-CGAuGUGCGCcGAUCa -3' miRNA: 3'- uaGGCCGUUUGcGCU-UACGCGcUUAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 18460 | 0.69 | 0.663056 |
Target: 5'- uAUCagGGCAAguaccucGCGCGggUGCGCGc--- -3' miRNA: 3'- -UAGg-CCGUU-------UGCGCuuACGCGCuuag -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 4159 | 0.69 | 0.686775 |
Target: 5'- aGUCUGGUGacAugGCGAAcGaCGUGAAUCg -3' miRNA: 3'- -UAGGCCGU--UugCGCUUaC-GCGCUUAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 17051 | 0.69 | 0.69799 |
Target: 5'- cGUUCGGCGuGAUGCGGcgcaCGCGGAUCa -3' miRNA: 3'- -UAGGCCGU-UUGCGCUuac-GCGCUUAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 30418 | 0.68 | 0.708025 |
Target: 5'- cGUCC-GCGuGCGCGAcgGCgaggugcuguuucGCGAGUCg -3' miRNA: 3'- -UAGGcCGUuUGCGCUuaCG-------------CGCUUAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 9484 | 0.68 | 0.709136 |
Target: 5'- aGUCgCGGCGAcgcagGCgGCGAcaGCGUGggUCg -3' miRNA: 3'- -UAG-GCCGUU-----UG-CGCUuaCGCGCuuAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 25657 | 0.68 | 0.709136 |
Target: 5'- -gUCGGCAAccgccGCGCGGAcgGCG-GGAUCg -3' miRNA: 3'- uaGGCCGUU-----UGCGCUUa-CGCgCUUAG- -5' |
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24904 | 3' | -52.3 | NC_005284.1 | + | 42247 | 0.68 | 0.720202 |
Target: 5'- uUCCcGCAGACgagcguuuggGCGAGUGUGCGccGGUCg -3' miRNA: 3'- uAGGcCGUUUG----------CGCUUACGCGC--UUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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