miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24905 3' -49.9 NC_005284.1 + 13246 0.74 0.562242
Target:  5'- gGAAuUUGGCggCACGGACGACGCGa -3'
miRNA:   3'- gCUUuGGCCGaaGUGCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 14055 0.67 0.93113
Target:  5'- gCGGcaGGCUGGCgucaUCGCGAACGAgUGguGg -3'
miRNA:   3'- -GCU--UUGGCCGa---AGUGCUUGUU-GCguC- -5'
24905 3' -49.9 NC_005284.1 + 16024 0.76 0.485874
Target:  5'- uGAGGCCGGCgUCGCGcgcCGACGuCAGg -3'
miRNA:   3'- gCUUUGGCCGaAGUGCuu-GUUGC-GUC- -5'
24905 3' -49.9 NC_005284.1 + 16228 0.66 0.946904
Target:  5'- -cAGGCCGGCcUCgcggggacgGCGAACAACgGCAc -3'
miRNA:   3'- gcUUUGGCCGaAG---------UGCUUGUUG-CGUc -5'
24905 3' -49.9 NC_005284.1 + 16295 0.72 0.709136
Target:  5'- gCGAGGCCGGCcugUUGCGGACugaGCAu -3'
miRNA:   3'- -GCUUUGGCCGa--AGUGCUUGuugCGUc -5'
24905 3' -49.9 NC_005284.1 + 16685 0.66 0.946904
Target:  5'- uGAGGCCGGCgUCggcgugccgcugACGucCGACGCGc -3'
miRNA:   3'- gCUUUGGCCGaAG------------UGCuuGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 16753 0.7 0.804309
Target:  5'- cCGAcGCCGGCcUCACGcucGACGGC-CGGa -3'
miRNA:   3'- -GCUuUGGCCGaAGUGC---UUGUUGcGUC- -5'
24905 3' -49.9 NC_005284.1 + 17388 0.72 0.69799
Target:  5'- aGGAGCCGuGCUUCACcuGCAACuGCGu -3'
miRNA:   3'- gCUUUGGC-CGAAGUGcuUGUUG-CGUc -5'
24905 3' -49.9 NC_005284.1 + 17720 0.66 0.955973
Target:  5'- aCGGcguUCGGCUgCACGucGCAgGCGCAGg -3'
miRNA:   3'- -GCUuu-GGCCGAaGUGCu-UGU-UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 21551 0.66 0.955973
Target:  5'- ---cAUCGGCUUgccgACGAGCAggccGCGCGGg -3'
miRNA:   3'- gcuuUGGCCGAAg---UGCUUGU----UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 21915 0.68 0.898957
Target:  5'- gCGucGCCGGCg--ACGAuCAGCGCGa -3'
miRNA:   3'- -GCuuUGGCCGaagUGCUuGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 25752 0.7 0.794343
Target:  5'- aGAGGCuUGGCUcgCGCGAACGGCuGCGc -3'
miRNA:   3'- gCUUUG-GCCGAa-GUGCUUGUUG-CGUc -5'
24905 3' -49.9 NC_005284.1 + 26912 0.7 0.773879
Target:  5'- aGAAggucgGCCGGCauacgCuCGAGCAACGCAu -3'
miRNA:   3'- gCUU-----UGGCCGaa---GuGCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 29205 0.67 0.919142
Target:  5'- aCGugcGuuGGCUUCACGucuGCGACGUu- -3'
miRNA:   3'- -GCuu-UggCCGAAGUGCu--UGUUGCGuc -5'
24905 3' -49.9 NC_005284.1 + 29463 0.72 0.709136
Target:  5'- aCGAAACaaGGCUUguCGAGCGACugGCGGa -3'
miRNA:   3'- -GCUUUGg-CCGAAguGCUUGUUG--CGUC- -5'
24905 3' -49.9 NC_005284.1 + 30306 0.7 0.773879
Target:  5'- uGAGGCCGGCUaugCuCGAGCGAuucacguacCGCGGc -3'
miRNA:   3'- gCUUUGGCCGAa--GuGCUUGUU---------GCGUC- -5'
24905 3' -49.9 NC_005284.1 + 33884 0.68 0.898957
Target:  5'- gCGu-GCgGGCgaUUACGAACGGCGCGa -3'
miRNA:   3'- -GCuuUGgCCGa-AGUGCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 34030 0.66 0.946904
Target:  5'- ---cGCCGGCcgacgaGCGGGCGGCGCu- -3'
miRNA:   3'- gcuuUGGCCGaag---UGCUUGUUGCGuc -5'
24905 3' -49.9 NC_005284.1 + 34339 0.73 0.641476
Target:  5'- uGAAACUGGCUgCGCGcGCAGuuacgcCGCAGg -3'
miRNA:   3'- gCUUUGGCCGAaGUGCuUGUU------GCGUC- -5'
24905 3' -49.9 NC_005284.1 + 35971 0.67 0.925283
Target:  5'- uGAuGCUcGCUUCGCGAACAAUcaGCGu -3'
miRNA:   3'- gCUuUGGcCGAAGUGCUUGUUG--CGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.