miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24905 3' -49.9 NC_005284.1 + 2509 0.67 0.908703
Target:  5'- gCGAAgcaacACCGGCUguaCACGGuCAuccauucucagccaaACGCAGa -3'
miRNA:   3'- -GCUU-----UGGCCGAa--GUGCUuGU---------------UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 3844 0.66 0.95158
Target:  5'- uGAGGCCGGCc-CAUGAuccgauCGGCGUAu -3'
miRNA:   3'- gCUUUGGCCGaaGUGCUu-----GUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 4779 1.09 0.004036
Target:  5'- uCGAAACCGGCUUCACGAACAACGCAGc -3'
miRNA:   3'- -GCUUUGGCCGAAGUGCUUGUUGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 4847 0.7 0.814083
Target:  5'- uGAAGCCGGUUUCgACGGuguacuCGAUGCu- -3'
miRNA:   3'- gCUUUGGCCGAAG-UGCUu-----GUUGCGuc -5'
24905 3' -49.9 NC_005284.1 + 5764 0.67 0.925283
Target:  5'- gCGAAuCCGGCgggucaaccUCGCGAAUAAggccguucacuCGCAGu -3'
miRNA:   3'- -GCUUuGGCCGa--------AGUGCUUGUU-----------GCGUC- -5'
24905 3' -49.9 NC_005284.1 + 6701 0.66 0.941938
Target:  5'- aCGAAggGCaaGGCUgauUCGcCGAACAACGCGu -3'
miRNA:   3'- -GCUU--UGg-CCGA---AGU-GCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 7801 0.71 0.731175
Target:  5'- aCGccGCCGGCggcggCACGAGCuucGGCGCAc -3'
miRNA:   3'- -GCuuUGGCCGaa---GUGCUUG---UUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 9426 0.66 0.955973
Target:  5'- uGAAACuCGGCgugUCGCucGCGGCcggGCGGa -3'
miRNA:   3'- gCUUUG-GCCGa--AGUGcuUGUUG---CGUC- -5'
24905 3' -49.9 NC_005284.1 + 9823 0.74 0.55109
Target:  5'- gGAAAUCGGCgcgcgcaUCACGGGCAcgcccuACGCGGc -3'
miRNA:   3'- gCUUUGGCCGa------AGUGCUUGU------UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 9993 0.69 0.851029
Target:  5'- cCGcuGCUGcGCgagCGCGAGCGACGCu- -3'
miRNA:   3'- -GCuuUGGC-CGaa-GUGCUUGUUGCGuc -5'
24905 3' -49.9 NC_005284.1 + 10109 0.67 0.912705
Target:  5'- uGAAGaCGGCgaccgaaagCGCGGcgACGGCGCAGa -3'
miRNA:   3'- gCUUUgGCCGaa-------GUGCU--UGUUGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 10259 0.73 0.642613
Target:  5'- cCGcGAACUGGCUgcuguuucgcgacaaCGCGAGCAGCGCGa -3'
miRNA:   3'- -GC-UUUGGCCGAa--------------GUGCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 10396 0.74 0.562242
Target:  5'- aCGAAGCaagaGGCgUCGCGGGCGgccgaugacGCGCAGu -3'
miRNA:   3'- -GCUUUGg---CCGaAGUGCUUGU---------UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 10443 0.72 0.69799
Target:  5'- uCGGAAuUUGGCgaCGCGGGCGGCGCAa -3'
miRNA:   3'- -GCUUU-GGCCGaaGUGCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 10904 0.69 0.851029
Target:  5'- aCGAAGCgCGGaCgaagggCGCGAAUgauGCGCAGg -3'
miRNA:   3'- -GCUUUG-GCC-Gaa----GUGCUUGu--UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 11011 0.74 0.584718
Target:  5'- aCGAGGCCGGCcaUGCGGGCcuGCGCAu -3'
miRNA:   3'- -GCUUUGGCCGaaGUGCUUGu-UGCGUc -5'
24905 3' -49.9 NC_005284.1 + 11143 0.68 0.891652
Target:  5'- aGAAAuUCGGCUUCAau-GCuGACGCAGc -3'
miRNA:   3'- gCUUU-GGCCGAAGUgcuUG-UUGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 12216 0.69 0.851029
Target:  5'- gGGGACCgGGCacgucCACGAGCGACaGCAu -3'
miRNA:   3'- gCUUUGG-CCGaa---GUGCUUGUUG-CGUc -5'
24905 3' -49.9 NC_005284.1 + 12343 0.71 0.752789
Target:  5'- gCGAu-CCGGCUUCGCGcgauuCGcCGCGGg -3'
miRNA:   3'- -GCUuuGGCCGAAGUGCuu---GUuGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 12881 0.7 0.814083
Target:  5'- aCGgcGCCGuCUaCACGAugACGGCGCAGu -3'
miRNA:   3'- -GCuuUGGCcGAaGUGCU--UGUUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.