Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24905 | 3' | -49.9 | NC_005284.1 | + | 35971 | 0.67 | 0.925283 |
Target: 5'- uGAuGCUcGCUUCGCGAACAAUcaGCGu -3' miRNA: 3'- gCUuUGGcCGAAGUGCUUGUUG--CGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 10904 | 0.69 | 0.851029 |
Target: 5'- aCGAAGCgCGGaCgaagggCGCGAAUgauGCGCAGg -3' miRNA: 3'- -GCUUUG-GCC-Gaa----GUGCUUGu--UGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 43480 | 0.69 | 0.859677 |
Target: 5'- aGAuccGACCGGCUacugUCGCGcuuuucCAGCGCAu -3' miRNA: 3'- gCU---UUGGCCGA----AGUGCuu----GUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 49386 | 0.68 | 0.884065 |
Target: 5'- -cGAGCUGGCgcgccgCACGGGCAA-GCAGc -3' miRNA: 3'- gcUUUGGCCGaa----GUGCUUGUUgCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 11143 | 0.68 | 0.891652 |
Target: 5'- aGAAAuUCGGCUUCAau-GCuGACGCAGc -3' miRNA: 3'- gCUUU-GGCCGAAGUgcuUG-UUGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 21915 | 0.68 | 0.898957 |
Target: 5'- gCGucGCCGGCg--ACGAuCAGCGCGa -3' miRNA: 3'- -GCuuUGGCCGaagUGCUuGUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 2509 | 0.67 | 0.908703 |
Target: 5'- gCGAAgcaacACCGGCUguaCACGGuCAuccauucucagccaaACGCAGa -3' miRNA: 3'- -GCUU-----UGGCCGAa--GUGCUuGU---------------UGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 10109 | 0.67 | 0.912705 |
Target: 5'- uGAAGaCGGCgaccgaaagCGCGGcgACGGCGCAGa -3' miRNA: 3'- gCUUUgGCCGaa-------GUGCU--UGUUGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 29205 | 0.67 | 0.919142 |
Target: 5'- aCGugcGuuGGCUUCACGucuGCGACGUu- -3' miRNA: 3'- -GCuu-UggCCGAAGUGCu--UGUUGCGuc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 12216 | 0.69 | 0.851029 |
Target: 5'- gGGGACCgGGCacgucCACGAGCGACaGCAu -3' miRNA: 3'- gCUUUGG-CCGaa---GUGCUUGUUG-CGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 43360 | 0.7 | 0.814083 |
Target: 5'- cCGAcAGgCGGuUUUCGCGAuCGACGCAGc -3' miRNA: 3'- -GCU-UUgGCC-GAAGUGCUuGUUGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 12881 | 0.7 | 0.814083 |
Target: 5'- aCGgcGCCGuCUaCACGAugACGGCGCAGu -3' miRNA: 3'- -GCuuUGGCcGAaGUGCU--UGUUGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 9823 | 0.74 | 0.55109 |
Target: 5'- gGAAAUCGGCgcgcgcaUCACGGGCAcgcccuACGCGGc -3' miRNA: 3'- gCUUUGGCCGa------AGUGCUUGU------UGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 10396 | 0.74 | 0.562242 |
Target: 5'- aCGAAGCaagaGGCgUCGCGGGCGgccgaugacGCGCAGu -3' miRNA: 3'- -GCUUUGg---CCGaAGUGCUUGU---------UGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 10259 | 0.73 | 0.642613 |
Target: 5'- cCGcGAACUGGCUgcuguuucgcgacaaCGCGAGCAGCGCGa -3' miRNA: 3'- -GC-UUUGGCCGAa--------------GUGCUUGUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 17388 | 0.72 | 0.69799 |
Target: 5'- aGGAGCCGuGCUUCACcuGCAACuGCGu -3' miRNA: 3'- gCUUUGGC-CGAAGUGcuUGUUG-CGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 10443 | 0.72 | 0.69799 |
Target: 5'- uCGGAAuUUGGCgaCGCGGGCGGCGCAa -3' miRNA: 3'- -GCUUU-GGCCGaaGUGCUUGUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 53783 | 0.72 | 0.708025 |
Target: 5'- uGAuGCCGGCUgcugCgGCGAGCGcaucuugcgucauGCGCAGa -3' miRNA: 3'- gCUuUGGCCGAa---G-UGCUUGU-------------UGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 12343 | 0.71 | 0.752789 |
Target: 5'- gCGAu-CCGGCUUCGCGcgauuCGcCGCGGg -3' miRNA: 3'- -GCUuuGGCCGAAGUGCuu---GUuGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 30306 | 0.7 | 0.773879 |
Target: 5'- uGAGGCCGGCUaugCuCGAGCGAuucacguacCGCGGc -3' miRNA: 3'- gCUUUGGCCGAa--GuGCUUGUU---------GCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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