Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24906 | 5' | -51 | NC_005284.1 | + | 5784 | 1.1 | 0.002525 |
Target: 5'- cGACCAAACGCCGAUCGUUUCGCUCGAg -3' miRNA: 3'- -CUGGUUUGCGGCUAGCAAAGCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 21612 | 0.74 | 0.498741 |
Target: 5'- aGCCGAuguGCGCCGAUCagg-UGCUCGAc -3' miRNA: 3'- cUGGUU---UGCGGCUAGcaaaGCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 7076 | 0.73 | 0.552928 |
Target: 5'- cACCGA-CGCCGAUCGgcUUGC-CGAc -3' miRNA: 3'- cUGGUUuGCGGCUAGCaaAGCGaGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 10512 | 0.72 | 0.5975 |
Target: 5'- -cUCGGAUGCCGAUCaGgcagCGCUCGAu -3' miRNA: 3'- cuGGUUUGCGGCUAG-Caaa-GCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 51559 | 0.72 | 0.620007 |
Target: 5'- uGACCAaAGCGCgCGAUCaccgcccaUCGCUCGAc -3' miRNA: 3'- -CUGGU-UUGCG-GCUAGcaa-----AGCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 38651 | 0.7 | 0.720577 |
Target: 5'- cGGCCGAACgGCCG-UC---UCGCUCGGg -3' miRNA: 3'- -CUGGUUUG-CGGCuAGcaaAGCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 24806 | 0.7 | 0.731451 |
Target: 5'- gGGCCGaaGACGCaCGGgcgUCGUUUCGCccuUCGGc -3' miRNA: 3'- -CUGGU--UUGCG-GCU---AGCAAAGCG---AGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 40019 | 0.7 | 0.763396 |
Target: 5'- cGACCG--UGUCGGUCGagUgGCUCGAa -3' miRNA: 3'- -CUGGUuuGCGGCUAGCaaAgCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 532 | 0.69 | 0.773778 |
Target: 5'- cGACCAGGCGCUGc-CGgcUCGCcgggUCGAg -3' miRNA: 3'- -CUGGUUUGCGGCuaGCaaAGCG----AGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 33177 | 0.69 | 0.773778 |
Target: 5'- gGACCucgcGACGUCGAUCGgUUCcCUUGAa -3' miRNA: 3'- -CUGGu---UUGCGGCUAGCaAAGcGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 43826 | 0.69 | 0.773778 |
Target: 5'- gGACCGccguGCGCCGAUCGaa--GCUUGu -3' miRNA: 3'- -CUGGUu---UGCGGCUAGCaaagCGAGCu -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 30447 | 0.69 | 0.784006 |
Target: 5'- gGGCCGAGCGC--AUCGcccucgCGCUCGAu -3' miRNA: 3'- -CUGGUUUGCGgcUAGCaaa---GCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 49452 | 0.68 | 0.823146 |
Target: 5'- cGACCGGccacucuucACGCCGGUaacgaCGgcgaagCGCUCGAa -3' miRNA: 3'- -CUGGUU---------UGCGGCUA-----GCaaa---GCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 51225 | 0.68 | 0.850329 |
Target: 5'- cGCCAAGCGCUGcaCGUgUCGUUCa- -3' miRNA: 3'- cUGGUUUGCGGCuaGCAaAGCGAGcu -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 7445 | 0.68 | 0.858922 |
Target: 5'- --aCGAACGCCaGAUCGgc-CGCgUCGAg -3' miRNA: 3'- cugGUUUGCGG-CUAGCaaaGCG-AGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 40734 | 0.67 | 0.867266 |
Target: 5'- gGGCCAGcaguACGCUGAUCGgg-UGCaugCGAu -3' miRNA: 3'- -CUGGUU----UGCGGCUAGCaaaGCGa--GCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 35604 | 0.67 | 0.875354 |
Target: 5'- cGACCGcgacACGggaaucgcucuUCGAcggcuUCGUUUCGCUCGAa -3' miRNA: 3'- -CUGGUu---UGC-----------GGCU-----AGCAAAGCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 15361 | 0.67 | 0.875354 |
Target: 5'- aGGCCGAugGCuCGAUCGgcaUCGa-CGAc -3' miRNA: 3'- -CUGGUUugCG-GCUAGCaa-AGCgaGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 34851 | 0.67 | 0.875354 |
Target: 5'- cGCaCAGGCGCaCGAUUGggaUCgGCUCGAc -3' miRNA: 3'- cUG-GUUUGCG-GCUAGCaa-AG-CGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 46433 | 0.67 | 0.883177 |
Target: 5'- gGAgCGAACGaaCCGAUCGccgUCGC-CGAa -3' miRNA: 3'- -CUgGUUUGC--GGCUAGCaa-AGCGaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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