miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24906 5' -51 NC_005284.1 + 532 0.69 0.773778
Target:  5'- cGACCAGGCGCUGc-CGgcUCGCcgggUCGAg -3'
miRNA:   3'- -CUGGUUUGCGGCuaGCaaAGCG----AGCU- -5'
24906 5' -51 NC_005284.1 + 4744 0.66 0.911717
Target:  5'- gGGCCAGACGUCG-UCGaguaGCaUCGAg -3'
miRNA:   3'- -CUGGUUUGCGGCuAGCaaagCG-AGCU- -5'
24906 5' -51 NC_005284.1 + 5163 0.66 0.924278
Target:  5'- cGACUggGCGUCGAUCGagUUGa-CGAa -3'
miRNA:   3'- -CUGGuuUGCGGCUAGCaaAGCgaGCU- -5'
24906 5' -51 NC_005284.1 + 5784 1.1 0.002525
Target:  5'- cGACCAAACGCCGAUCGUUUCGCUCGAg -3'
miRNA:   3'- -CUGGUUUGCGGCUAGCAAAGCGAGCU- -5'
24906 5' -51 NC_005284.1 + 5958 0.66 0.924278
Target:  5'- cGCCAcggcuGGCGCCGAUCcgaucgUCGCgaCGAu -3'
miRNA:   3'- cUGGU-----UUGCGGCUAGcaa---AGCGa-GCU- -5'
24906 5' -51 NC_005284.1 + 6838 0.66 0.924278
Target:  5'- cACCGAguuggcGCGCgCGAUCGaucgugUGCUCGGa -3'
miRNA:   3'- cUGGUU------UGCG-GCUAGCaaa---GCGAGCU- -5'
24906 5' -51 NC_005284.1 + 7076 0.73 0.552928
Target:  5'- cACCGA-CGCCGAUCGgcUUGC-CGAc -3'
miRNA:   3'- cUGGUUuGCGGCUAGCaaAGCGaGCU- -5'
24906 5' -51 NC_005284.1 + 7445 0.68 0.858922
Target:  5'- --aCGAACGCCaGAUCGgc-CGCgUCGAg -3'
miRNA:   3'- cugGUUUGCGG-CUAGCaaaGCG-AGCU- -5'
24906 5' -51 NC_005284.1 + 8668 0.66 0.924278
Target:  5'- aGACCGcgcauGCGgCGGUCGUaUUCGgUCGu -3'
miRNA:   3'- -CUGGUu----UGCgGCUAGCA-AAGCgAGCu -5'
24906 5' -51 NC_005284.1 + 8835 0.66 0.902935
Target:  5'- cGCCGAACGCCGcugcggcggcuugugCGUaUUCGCggaUCGAa -3'
miRNA:   3'- cUGGUUUGCGGCua-------------GCA-AAGCG---AGCU- -5'
24906 5' -51 NC_005284.1 + 9628 0.67 0.890731
Target:  5'- uGCCu-GCGCCGccUCGUgUUGCUUGAu -3'
miRNA:   3'- cUGGuuUGCGGCu-AGCAaAGCGAGCU- -5'
24906 5' -51 NC_005284.1 + 10512 0.72 0.5975
Target:  5'- -cUCGGAUGCCGAUCaGgcagCGCUCGAu -3'
miRNA:   3'- cuGGUUUGCGGCUAG-Caaa-GCGAGCU- -5'
24906 5' -51 NC_005284.1 + 10959 0.66 0.930123
Target:  5'- cGCCGGACGagcggaCGcAUCaagUCGCUCGAa -3'
miRNA:   3'- cUGGUUUGCg-----GC-UAGcaaAGCGAGCU- -5'
24906 5' -51 NC_005284.1 + 15323 0.67 0.883177
Target:  5'- cGGCaucgcgaAAugGgUGAUCGUgUCGCUCGGc -3'
miRNA:   3'- -CUGg------UUugCgGCUAGCAaAGCGAGCU- -5'
24906 5' -51 NC_005284.1 + 15361 0.67 0.875354
Target:  5'- aGGCCGAugGCuCGAUCGgcaUCGa-CGAc -3'
miRNA:   3'- -CUGGUUugCG-GCUAGCaa-AGCgaGCU- -5'
24906 5' -51 NC_005284.1 + 21612 0.74 0.498741
Target:  5'- aGCCGAuguGCGCCGAUCagg-UGCUCGAc -3'
miRNA:   3'- cUGGUU---UGCGGCUAGcaaaGCGAGCU- -5'
24906 5' -51 NC_005284.1 + 21997 0.67 0.890731
Target:  5'- cGAUCucGCGCUGAUCG--UCGCcggCGAc -3'
miRNA:   3'- -CUGGuuUGCGGCUAGCaaAGCGa--GCU- -5'
24906 5' -51 NC_005284.1 + 24806 0.7 0.731451
Target:  5'- gGGCCGaaGACGCaCGGgcgUCGUUUCGCccuUCGGc -3'
miRNA:   3'- -CUGGU--UUGCG-GCU---AGCAAAGCG---AGCU- -5'
24906 5' -51 NC_005284.1 + 30363 0.67 0.898008
Target:  5'- cGAUCGAGCGCgaGggCGaugCGCUCGGc -3'
miRNA:   3'- -CUGGUUUGCGg-CuaGCaaaGCGAGCU- -5'
24906 5' -51 NC_005284.1 + 30447 0.69 0.784006
Target:  5'- gGGCCGAGCGC--AUCGcccucgCGCUCGAu -3'
miRNA:   3'- -CUGGUUUGCGgcUAGCaaa---GCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.