miRNA display CGI


Results 21 - 40 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24907 5' -57.2 NC_005284.1 + 16417 0.75 0.209727
Target:  5'- aGCGcaucuACGGCGCCaaggGAGGUGguGGUGGc -3'
miRNA:   3'- gCGCu----UGCUGCGG----CUCUACguCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 18047 0.73 0.257096
Target:  5'- aGCGcuuCGACGCCGAuccGguGGCGGg -3'
miRNA:   3'- gCGCuu-GCUGCGGCUcuaCguCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 18478 0.7 0.386014
Target:  5'- gCGCGggUGcGCGCCGAGAacGCGcucGGCGu -3'
miRNA:   3'- -GCGCuuGC-UGCGGCUCUa-CGU---CCGCc -5'
24907 5' -57.2 NC_005284.1 + 18831 0.69 0.479439
Target:  5'- gGCGAAgGG-GCCGGGcGUGCAGG-GGc -3'
miRNA:   3'- gCGCUUgCUgCGGCUC-UACGUCCgCC- -5'
24907 5' -57.2 NC_005284.1 + 19028 0.71 0.360419
Target:  5'- gGCG-GCGAuCGCCGAGG-GCGauauGGCGGu -3'
miRNA:   3'- gCGCuUGCU-GCGGCUCUaCGU----CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 19379 0.7 0.41187
Target:  5'- uGCGaAGCGAuuCGCCGuGAucgacgagggcggUGCAGGCGu -3'
miRNA:   3'- gCGC-UUGCU--GCGGCuCU-------------ACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 19418 0.66 0.614655
Target:  5'- nGUGAucgGCG-CGCCGuucguuGUGCAaGGCGGg -3'
miRNA:   3'- gCGCU---UGCuGCGGCuc----UACGU-CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 19462 0.72 0.31287
Target:  5'- uGCGGcaGGCGCUGAucGGUGCGGGCuGGa -3'
miRNA:   3'- gCGCUugCUGCGGCU--CUACGUCCG-CC- -5'
24907 5' -57.2 NC_005284.1 + 21347 0.66 0.614655
Target:  5'- gGCGcGCGGC-CCGAuguUGUAGGCGa -3'
miRNA:   3'- gCGCuUGCUGcGGCUcu-ACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 21630 0.7 0.431249
Target:  5'- cCGCGcuCGACGCCGAGcaGCGuGCGa -3'
miRNA:   3'- -GCGCuuGCUGCGGCUCuaCGUcCGCc -5'
24907 5' -57.2 NC_005284.1 + 21660 0.67 0.572017
Target:  5'- cCGCGcACGAUGCCGcc--GCGucGGCGGu -3'
miRNA:   3'- -GCGCuUGCUGCGGCucuaCGU--CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 22217 0.67 0.560401
Target:  5'- cCGCGcuuuccgaagcacGACuguuACGUCGAGGUguucGCGGGCGGg -3'
miRNA:   3'- -GCGC-------------UUGc---UGCGGCUCUA----CGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 23082 0.7 0.394808
Target:  5'- gGCG-GCGACGCUGGuagcauGUGgGGGCGGa -3'
miRNA:   3'- gCGCuUGCUGCGGCUc-----UACgUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 23452 0.68 0.530119
Target:  5'- gGCuacauCGACacacCCGAGAaGCAGGCGGc -3'
miRNA:   3'- gCGcuu--GCUGc---GGCUCUaCGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 25922 0.66 0.636094
Target:  5'- gCGCGccgcuuaGAUGCCGuucaagGUAGGCGGg -3'
miRNA:   3'- -GCGCuug----CUGCGGCucua--CGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 28616 0.69 0.469584
Target:  5'- gGCGAACG-UGCCGGGuAUGacgugaAGGCGc -3'
miRNA:   3'- gCGCUUGCuGCGGCUC-UACg-----UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 29873 0.72 0.320454
Target:  5'- uCGCGAugguCGGCGCCGGcGUGUuccaAGGCGa -3'
miRNA:   3'- -GCGCUu---GCUGCGGCUcUACG----UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 30337 0.73 0.283902
Target:  5'- cCGCGGcuACGACGuuGAGAUcgAGGCGa -3'
miRNA:   3'- -GCGCU--UGCUGCggCUCUAcgUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 30421 0.69 0.489394
Target:  5'- cCGCGugcGCGACGgCGAGGUGCuguuucGCGa -3'
miRNA:   3'- -GCGCu--UGCUGCgGCUCUACGuc----CGCc -5'
24907 5' -57.2 NC_005284.1 + 30660 0.66 0.636094
Target:  5'- uGCGuGCGGcCGUCGAGcagccgGCcGGCGGc -3'
miRNA:   3'- gCGCuUGCU-GCGGCUCua----CGuCCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.