miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24907 5' -57.2 NC_005284.1 + 938 0.68 0.519812
Target:  5'- uGCuGGACGACgaguucgguGCCGAGGUGUAcgccGGCGc -3'
miRNA:   3'- gCG-CUUGCUG---------CGGCUCUACGU----CCGCc -5'
24907 5' -57.2 NC_005284.1 + 4011 0.67 0.599678
Target:  5'- gCGCGAAuCGACGCgGuGAaaucgaucaucgcGCAcGGCGGa -3'
miRNA:   3'- -GCGCUU-GCUGCGgCuCUa------------CGU-CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 5921 1.1 0.000672
Target:  5'- aCGCGAACGACGCCGAGAUGCAGGCGGc -3'
miRNA:   3'- -GCGCUUGCUGCGGCUCUACGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 5952 0.71 0.34726
Target:  5'- uGCGGACGccacggcugGCGCCGAuccgaucgucgcgacGAUGCgauucGGGCGGc -3'
miRNA:   3'- gCGCUUGC---------UGCGGCU---------------CUACG-----UCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 7463 0.66 0.636094
Target:  5'- uCGCGAGCGACGaaaaggaauCCGAGcucgGCuugcccgauccGGGCGa -3'
miRNA:   3'- -GCGCUUGCUGC---------GGCUCua--CG-----------UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 7706 0.68 0.540498
Target:  5'- gCGUGAGCGguGCGCCGAagcucGUGCcgccgccGGCGGc -3'
miRNA:   3'- -GCGCUUGC--UGCGGCUc----UACGu------CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 7999 0.71 0.360419
Target:  5'- gCGCGAgugACGACGCgcacAUGCAGGCGa -3'
miRNA:   3'- -GCGCU---UGCUGCGgcucUACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 8421 0.67 0.600746
Target:  5'- uGuCGGACauGAUGCCGAGAUgguccggcgagcccGCGacGGCGGa -3'
miRNA:   3'- gC-GCUUG--CUGCGGCUCUA--------------CGU--CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 9503 0.7 0.41187
Target:  5'- cCGCGAGCGAcaCGCCGAguuucacGAUGCcgucgAGGUGc -3'
miRNA:   3'- -GCGCUUGCU--GCGGCU-------CUACG-----UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 9672 0.73 0.257096
Target:  5'- uGCGAGCGAUGCgCGAaagccuugcGAUGCAGuCGGc -3'
miRNA:   3'- gCGCUUGCUGCG-GCU---------CUACGUCcGCC- -5'
24907 5' -57.2 NC_005284.1 + 9739 0.67 0.603953
Target:  5'- aGCGAAgcuUGCCGAagcGCGGGCGGu -3'
miRNA:   3'- gCGCUUgcuGCGGCUcuaCGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 9979 0.69 0.459834
Target:  5'- gCGCGAGCGACGCUucggcgcgcuGAGcuccUGCuGuGCGGc -3'
miRNA:   3'- -GCGCUUGCUGCGG----------CUCu---ACGuC-CGCC- -5'
24907 5' -57.2 NC_005284.1 + 10286 0.79 0.107366
Target:  5'- aCGCGAgcagcGCGACGUCGAGucugaucgacAUGCAGGCGc -3'
miRNA:   3'- -GCGCU-----UGCUGCGGCUC----------UACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 10456 0.67 0.58688
Target:  5'- aCGCGGGCGGCgcaaagugucaugguGCCGAcguuuggcGAUGCGccgucGGUGGu -3'
miRNA:   3'- -GCGCUUGCUG---------------CGGCU--------CUACGU-----CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 10656 0.7 0.403731
Target:  5'- gCGCGAuuucucguCGACGCCGAGGUucgacGUcuugAGGCGa -3'
miRNA:   3'- -GCGCUu-------GCUGCGGCUCUA-----CG----UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 11015 0.67 0.582625
Target:  5'- gGCG-ACGAgGCCGGccAUGCGGGCc- -3'
miRNA:   3'- gCGCuUGCUgCGGCUc-UACGUCCGcc -5'
24907 5' -57.2 NC_005284.1 + 11946 0.66 0.621084
Target:  5'- gCGCuGACGAguucguuccgcaaUGCCGAGGUGCAcucgugucguucgcGGCGu -3'
miRNA:   3'- -GCGcUUGCU-------------GCGGCUCUACGU--------------CCGCc -5'
24907 5' -57.2 NC_005284.1 + 14515 0.69 0.489394
Target:  5'- aCGCGcAGCagccauCGCCGAcGcUGCGGGUGGg -3'
miRNA:   3'- -GCGC-UUGcu----GCGGCU-CuACGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 15724 0.68 0.530119
Target:  5'- gGCGucuguCGACGCgCGcGGUGUgGGGCGGa -3'
miRNA:   3'- gCGCuu---GCUGCG-GCuCUACG-UCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 15955 0.69 0.479439
Target:  5'- cCGCcucuGCGGCGaCGAGAcgGCAaGGCGGu -3'
miRNA:   3'- -GCGcu--UGCUGCgGCUCUa-CGU-CCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.