miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24907 5' -57.2 NC_005284.1 + 5921 1.1 0.000672
Target:  5'- aCGCGAACGACGCCGAGAUGCAGGCGGc -3'
miRNA:   3'- -GCGCUUGCUGCGGCUCUACGUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 10286 0.79 0.107366
Target:  5'- aCGCGAgcagcGCGACGUCGAGucugaucgacAUGCAGGCGc -3'
miRNA:   3'- -GCGCU-----UGCUGCGGCUC----------UACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 30891 0.76 0.170076
Target:  5'- uCGCGcAGCGACcgagcccaGUCGGGAUGCAucgGGCGGg -3'
miRNA:   3'- -GCGC-UUGCUG--------CGGCUCUACGU---CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 16417 0.75 0.209727
Target:  5'- aGCGcaucuACGGCGCCaaggGAGGUGguGGUGGc -3'
miRNA:   3'- gCGCu----UGCUGCGG----CUCUACguCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 9672 0.73 0.257096
Target:  5'- uGCGAGCGAUGCgCGAaagccuugcGAUGCAGuCGGc -3'
miRNA:   3'- gCGCUUGCUGCG-GCU---------CUACGUCcGCC- -5'
24907 5' -57.2 NC_005284.1 + 18047 0.73 0.257096
Target:  5'- aGCGcuuCGACGCCGAuccGguGGCGGg -3'
miRNA:   3'- gCGCuu-GCUGCGGCUcuaCguCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 30337 0.73 0.283902
Target:  5'- cCGCGGcuACGACGuuGAGAUcgAGGCGa -3'
miRNA:   3'- -GCGCU--UGCUGCggCUCUAcgUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 46602 0.72 0.305423
Target:  5'- aCGcCGAACGuC-CCGAGcgGCGGGCGu -3'
miRNA:   3'- -GC-GCUUGCuGcGGCUCuaCGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 19462 0.72 0.31287
Target:  5'- uGCGGcaGGCGCUGAucGGUGCGGGCuGGa -3'
miRNA:   3'- gCGCUugCUGCGGCU--CUACGUCCG-CC- -5'
24907 5' -57.2 NC_005284.1 + 29873 0.72 0.320454
Target:  5'- uCGCGAugguCGGCGCCGGcGUGUuccaAGGCGa -3'
miRNA:   3'- -GCGCUu---GCUGCGGCUcUACG----UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 54679 0.72 0.335239
Target:  5'- gGCGAagACGGCGCgCGAGcgguugcggugacGUGguGGUGGc -3'
miRNA:   3'- gCGCU--UGCUGCG-GCUC-------------UACguCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 5952 0.71 0.34726
Target:  5'- uGCGGACGccacggcugGCGCCGAuccgaucgucgcgacGAUGCgauucGGGCGGc -3'
miRNA:   3'- gCGCUUGC---------UGCGGCU---------------CUACG-----UCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 7999 0.71 0.360419
Target:  5'- gCGCGAgugACGACGCgcacAUGCAGGCGa -3'
miRNA:   3'- -GCGCU---UGCUGCGgcucUACGUCCGCc -5'
24907 5' -57.2 NC_005284.1 + 19028 0.71 0.360419
Target:  5'- gGCG-GCGAuCGCCGAGG-GCGauauGGCGGu -3'
miRNA:   3'- gCGCuUGCU-GCGGCUCUaCGU----CCGCC- -5'
24907 5' -57.2 NC_005284.1 + 42892 0.71 0.368818
Target:  5'- uCGaUGGACGAUGCCGAGAgGC-GGCa- -3'
miRNA:   3'- -GC-GCUUGCUGCGGCUCUaCGuCCGcc -5'
24907 5' -57.2 NC_005284.1 + 54742 0.7 0.386014
Target:  5'- gGCGGAUG-CGCCGGGuggGgAGGgGGg -3'
miRNA:   3'- gCGCUUGCuGCGGCUCua-CgUCCgCC- -5'
24907 5' -57.2 NC_005284.1 + 18478 0.7 0.386014
Target:  5'- gCGCGggUGcGCGCCGAGAacGCGcucGGCGu -3'
miRNA:   3'- -GCGCuuGC-UGCGGCUCUa-CGU---CCGCc -5'
24907 5' -57.2 NC_005284.1 + 23082 0.7 0.394808
Target:  5'- gGCG-GCGACGCUGGuagcauGUGgGGGCGGa -3'
miRNA:   3'- gCGCuUGCUGCGGCUc-----UACgUCCGCC- -5'
24907 5' -57.2 NC_005284.1 + 10656 0.7 0.403731
Target:  5'- gCGCGAuuucucguCGACGCCGAGGUucgacGUcuugAGGCGa -3'
miRNA:   3'- -GCGCUu-------GCUGCGGCUCUA-----CG----UCCGCc -5'
24907 5' -57.2 NC_005284.1 + 19379 0.7 0.41187
Target:  5'- uGCGaAGCGAuuCGCCGuGAucgacgagggcggUGCAGGCGu -3'
miRNA:   3'- gCGC-UUGCU--GCGGCuCU-------------ACGUCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.