Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24907 | 5' | -57.2 | NC_005284.1 | + | 21630 | 0.7 | 0.431249 |
Target: 5'- cCGCGcuCGACGCCGAGcaGCGuGCGa -3' miRNA: 3'- -GCGCuuGCUGCGGCUCuaCGUcCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 7999 | 0.71 | 0.360419 |
Target: 5'- gCGCGAgugACGACGCgcacAUGCAGGCGa -3' miRNA: 3'- -GCGCU---UGCUGCGgcucUACGUCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 19028 | 0.71 | 0.360419 |
Target: 5'- gGCG-GCGAuCGCCGAGG-GCGauauGGCGGu -3' miRNA: 3'- gCGCuUGCU-GCGGCUCUaCGU----CCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 42892 | 0.71 | 0.368818 |
Target: 5'- uCGaUGGACGAUGCCGAGAgGC-GGCa- -3' miRNA: 3'- -GC-GCUUGCUGCGGCUCUaCGuCCGcc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 18478 | 0.7 | 0.386014 |
Target: 5'- gCGCGggUGcGCGCCGAGAacGCGcucGGCGu -3' miRNA: 3'- -GCGCuuGC-UGCGGCUCUa-CGU---CCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 54742 | 0.7 | 0.386014 |
Target: 5'- gGCGGAUG-CGCCGGGuggGgAGGgGGg -3' miRNA: 3'- gCGCUUGCuGCGGCUCua-CgUCCgCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 23082 | 0.7 | 0.394808 |
Target: 5'- gGCG-GCGACGCUGGuagcauGUGgGGGCGGa -3' miRNA: 3'- gCGCuUGCUGCGGCUc-----UACgUCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 19379 | 0.7 | 0.41187 |
Target: 5'- uGCGaAGCGAuuCGCCGuGAucgacgagggcggUGCAGGCGu -3' miRNA: 3'- gCGC-UUGCU--GCGGCuCU-------------ACGUCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 47307 | 0.7 | 0.419189 |
Target: 5'- aCGCGcGCGA-GCUGAaccgucaacugaucGAUGCGGGCGa -3' miRNA: 3'- -GCGCuUGCUgCGGCU--------------CUACGUCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 5952 | 0.71 | 0.34726 |
Target: 5'- uGCGGACGccacggcugGCGCCGAuccgaucgucgcgacGAUGCgauucGGGCGGc -3' miRNA: 3'- gCGCUUGC---------UGCGGCU---------------CUACG-----UCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 54679 | 0.72 | 0.335239 |
Target: 5'- gGCGAagACGGCGCgCGAGcgguugcggugacGUGguGGUGGc -3' miRNA: 3'- gCGCU--UGCUGCG-GCUC-------------UACguCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 29873 | 0.72 | 0.320454 |
Target: 5'- uCGCGAugguCGGCGCCGGcGUGUuccaAGGCGa -3' miRNA: 3'- -GCGCUu---GCUGCGGCUcUACG----UCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 10286 | 0.79 | 0.107366 |
Target: 5'- aCGCGAgcagcGCGACGUCGAGucugaucgacAUGCAGGCGc -3' miRNA: 3'- -GCGCU-----UGCUGCGGCUC----------UACGUCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 30891 | 0.76 | 0.170076 |
Target: 5'- uCGCGcAGCGACcgagcccaGUCGGGAUGCAucgGGCGGg -3' miRNA: 3'- -GCGC-UUGCUG--------CGGCUCUACGU---CCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 16417 | 0.75 | 0.209727 |
Target: 5'- aGCGcaucuACGGCGCCaaggGAGGUGguGGUGGc -3' miRNA: 3'- gCGCu----UGCUGCGG----CUCUACguCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 18047 | 0.73 | 0.257096 |
Target: 5'- aGCGcuuCGACGCCGAuccGguGGCGGg -3' miRNA: 3'- gCGCuu-GCUGCGGCUcuaCguCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 9672 | 0.73 | 0.257096 |
Target: 5'- uGCGAGCGAUGCgCGAaagccuugcGAUGCAGuCGGc -3' miRNA: 3'- gCGCUUGCUGCG-GCU---------CUACGUCcGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 30337 | 0.73 | 0.283902 |
Target: 5'- cCGCGGcuACGACGuuGAGAUcgAGGCGa -3' miRNA: 3'- -GCGCU--UGCUGCggCUCUAcgUCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 46602 | 0.72 | 0.305423 |
Target: 5'- aCGcCGAACGuC-CCGAGcgGCGGGCGu -3' miRNA: 3'- -GC-GCUUGCuGcGGCUCuaCGUCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 19462 | 0.72 | 0.31287 |
Target: 5'- uGCGGcaGGCGCUGAucGGUGCGGGCuGGa -3' miRNA: 3'- gCGCUugCUGCGGCU--CUACGUCCG-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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