Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24913 | 5' | -58.5 | NC_005284.1 | + | 1691 | 0.67 | 0.445854 |
Target: 5'- -cGACGGGCgGCGGCauuacuucugcgUUGCGCc-GCg -3' miRNA: 3'- cuCUGCCUGgCGCCGg-----------AACGCGuuCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 2852 | 0.67 | 0.477194 |
Target: 5'- -cGACGG-CCGCGaauaagaCgaGCGCGAGCg -3' miRNA: 3'- cuCUGCCuGGCGCcg-----GaaCGCGUUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 8972 | 0.7 | 0.309978 |
Target: 5'- cGAG-CGGuuGCCGUGGUCgcGCGCGAuGCg -3' miRNA: 3'- -CUCuGCC--UGGCGCCGGaaCGCGUU-CG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 9360 | 0.71 | 0.274085 |
Target: 5'- -cGACGGGCgcgagCGCGaGgCUUGCGCAGGg -3' miRNA: 3'- cuCUGCCUG-----GCGC-CgGAACGCGUUCg -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 10008 | 1.1 | 0.000371 |
Target: 5'- cGAGACGGACCGCGGCCUUGCGCAAGCc -3' miRNA: 3'- -CUCUGCCUGGCGCCGGAACGCGUUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 11162 | 0.68 | 0.4382 |
Target: 5'- -uGACGcagcucgcGCCGCGGCCgccGCGCGcggaaAGCa -3' miRNA: 3'- cuCUGCc-------UGGCGCCGGaa-CGCGU-----UCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 11247 | 0.73 | 0.206921 |
Target: 5'- --cGCGcGCgGCGGCCgcgGCGCGAGCu -3' miRNA: 3'- cucUGCcUGgCGCCGGaa-CGCGUUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 11597 | 0.66 | 0.549184 |
Target: 5'- -cGGCGacuaCGCGGCCgaGCGUcAGCg -3' miRNA: 3'- cuCUGCcug-GCGCCGGaaCGCGuUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 11807 | 0.71 | 0.260688 |
Target: 5'- cGAGGCGGAgCa-GGUCgcGCGCGAGCg -3' miRNA: 3'- -CUCUGCCUgGcgCCGGaaCGCGUUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 14265 | 0.67 | 0.496309 |
Target: 5'- uGAGACGGA-UGCGGCgUUacaggacGCGguCAAGCg -3' miRNA: 3'- -CUCUGCCUgGCGCCGgAA-------CGC--GUUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 15895 | 0.67 | 0.48721 |
Target: 5'- aGAGGCGGugCGCGcGCUaucgGUGCugauucccGGCu -3' miRNA: 3'- -CUCUGCCugGCGC-CGGaa--CGCGu-------UCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 21280 | 0.69 | 0.374613 |
Target: 5'- ---uCGGGCCGCGcGCCUacUGCGgcAGCa -3' miRNA: 3'- cucuGCCUGGCGC-CGGA--ACGCguUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 25664 | 0.66 | 0.517828 |
Target: 5'- aAGGCGG--CGCaGCCguucGCGCGAGCc -3' miRNA: 3'- cUCUGCCugGCGcCGGaa--CGCGUUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 30923 | 0.67 | 0.477194 |
Target: 5'- cGGGCGGgcGCCGUGGCgCUUucGCcGCcGGCg -3' miRNA: 3'- cUCUGCC--UGGCGCCG-GAA--CG-CGuUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 32678 | 0.66 | 0.528207 |
Target: 5'- -cGGCGGggGCCaGCGGaCCgcaaGCGcCAAGCg -3' miRNA: 3'- cuCUGCC--UGG-CGCC-GGaa--CGC-GUUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 32790 | 0.71 | 0.267319 |
Target: 5'- -uGcCGGugCGuCGGCC-UGCGCGGGUu -3' miRNA: 3'- cuCuGCCugGC-GCCGGaACGCGUUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 33538 | 0.66 | 0.53866 |
Target: 5'- -cGACGGcgcguguaagcACUGCGGaucgaCUaccGCGCAGGCg -3' miRNA: 3'- cuCUGCC-----------UGGCGCCg----GAa--CGCGUUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 36925 | 0.7 | 0.317572 |
Target: 5'- cGAGGCGGA-CGCGGCaaa--GCAAGUg -3' miRNA: 3'- -CUCUGCCUgGCGCCGgaacgCGUUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 37872 | 0.67 | 0.447779 |
Target: 5'- -uGGCGGAuUUGUGGCCaa-CGCAAGCc -3' miRNA: 3'- cuCUGCCU-GGCGCCGGaacGCGUUCG- -5' |
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24913 | 5' | -58.5 | NC_005284.1 | + | 38579 | 0.77 | 0.099532 |
Target: 5'- cGAGACGG-CCGUucGGCCgaGCGCAcGCg -3' miRNA: 3'- -CUCUGCCuGGCG--CCGGaaCGCGUuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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