miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24913 5' -58.5 NC_005284.1 + 14265 0.67 0.496309
Target:  5'- uGAGACGGA-UGCGGCgUUacaggacGCGguCAAGCg -3'
miRNA:   3'- -CUCUGCCUgGCGCCGgAA-------CGC--GUUCG- -5'
24913 5' -58.5 NC_005284.1 + 47782 0.68 0.4382
Target:  5'- cGAGGCGGcGCuCGCGGag--GCGaCGGGCg -3'
miRNA:   3'- -CUCUGCC-UG-GCGCCggaaCGC-GUUCG- -5'
24913 5' -58.5 NC_005284.1 + 1691 0.67 0.445854
Target:  5'- -cGACGGGCgGCGGCauuacuucugcgUUGCGCc-GCg -3'
miRNA:   3'- cuCUGCCUGgCGCCGg-----------AACGCGuuCG- -5'
24913 5' -58.5 NC_005284.1 + 53891 0.67 0.446816
Target:  5'- uGGGCGG-CCGUcgucgcuugccuuGGCC-UGCGCGuagAGCg -3'
miRNA:   3'- cUCUGCCuGGCG-------------CCGGaACGCGU---UCG- -5'
24913 5' -58.5 NC_005284.1 + 2852 0.67 0.477194
Target:  5'- -cGACGG-CCGCGaauaagaCgaGCGCGAGCg -3'
miRNA:   3'- cuCUGCCuGGCGCcg-----GaaCGCGUUCG- -5'
24913 5' -58.5 NC_005284.1 + 30923 0.67 0.477194
Target:  5'- cGGGCGGgcGCCGUGGCgCUUucGCcGCcGGCg -3'
miRNA:   3'- cUCUGCC--UGGCGCCG-GAA--CG-CGuUCG- -5'
24913 5' -58.5 NC_005284.1 + 38985 0.67 0.481188
Target:  5'- --cGCGGGCUGCGcGCUggcgacgcaacgcaUGCGCGAGUu -3'
miRNA:   3'- cucUGCCUGGCGC-CGGa-------------ACGCGUUCG- -5'
24913 5' -58.5 NC_005284.1 + 15895 0.67 0.48721
Target:  5'- aGAGGCGGugCGCGcGCUaucgGUGCugauucccGGCu -3'
miRNA:   3'- -CUCUGCCugGCGC-CGGaa--CGCGu-------UCG- -5'
24913 5' -58.5 NC_005284.1 + 45750 0.67 0.490235
Target:  5'- gGAGGCGGugUgaaugguGUGGCUcuUcauuccaucgaacuuUGCGCAGGCg -3'
miRNA:   3'- -CUCUGCCugG-------CGCCGG--A---------------ACGCGUUCG- -5'
24913 5' -58.5 NC_005284.1 + 11162 0.68 0.4382
Target:  5'- -uGACGcagcucgcGCCGCGGCCgccGCGCGcggaaAGCa -3'
miRNA:   3'- cuCUGCc-------UGGCGCCGGaa-CGCGU-----UCG- -5'
24913 5' -58.5 NC_005284.1 + 41605 0.68 0.410183
Target:  5'- --cGCGaGGCCGC-GCCgaGUGCGAGCu -3'
miRNA:   3'- cucUGC-CUGGCGcCGGaaCGCGUUCG- -5'
24913 5' -58.5 NC_005284.1 + 45642 0.68 0.401094
Target:  5'- cGGGGCaGGCUgGCGGCUcgucggUGCGCGAGg -3'
miRNA:   3'- -CUCUGcCUGG-CGCCGGa-----ACGCGUUCg -5'
24913 5' -58.5 NC_005284.1 + 38579 0.77 0.099532
Target:  5'- cGAGACGG-CCGUucGGCCgaGCGCAcGCg -3'
miRNA:   3'- -CUCUGCCuGGCG--CCGGaaCGCGUuCG- -5'
24913 5' -58.5 NC_005284.1 + 54463 0.72 0.247829
Target:  5'- cGAcGCGGugCGCGGCaaucgucaUGCGCGAGg -3'
miRNA:   3'- -CUcUGCCugGCGCCGga------ACGCGUUCg -5'
24913 5' -58.5 NC_005284.1 + 11807 0.71 0.260688
Target:  5'- cGAGGCGGAgCa-GGUCgcGCGCGAGCg -3'
miRNA:   3'- -CUCUGCCUgGcgCCGGaaCGCGUUCG- -5'
24913 5' -58.5 NC_005284.1 + 32790 0.71 0.267319
Target:  5'- -uGcCGGugCGuCGGCC-UGCGCGGGUu -3'
miRNA:   3'- cuCuGCCugGC-GCCGGaACGCGUUCG- -5'
24913 5' -58.5 NC_005284.1 + 9360 0.71 0.274085
Target:  5'- -cGACGGGCgcgagCGCGaGgCUUGCGCAGGg -3'
miRNA:   3'- cuCUGCCUG-----GCGC-CgGAACGCGUUCg -5'
24913 5' -58.5 NC_005284.1 + 53690 0.7 0.325306
Target:  5'- -cGACGGGCa-CGGCaagUGCGCuGGCg -3'
miRNA:   3'- cuCUGCCUGgcGCCGga-ACGCGuUCG- -5'
24913 5' -58.5 NC_005284.1 + 45066 0.69 0.365204
Target:  5'- uGGGCGGGCgagCGCGGCUacGCGCucgugaaguugccGAGCg -3'
miRNA:   3'- cUCUGCCUG---GCGCCGGaaCGCG-------------UUCG- -5'
24913 5' -58.5 NC_005284.1 + 21280 0.69 0.374613
Target:  5'- ---uCGGGCCGCGcGCCUacUGCGgcAGCa -3'
miRNA:   3'- cucuGCCUGGCGC-CGGA--ACGCguUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.