miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 9873 0.67 0.747848
Target:  5'- gCGAGAcgGCAGcCGCA-CAGCAgGaGCUc -3'
miRNA:   3'- gGCUCUa-CGUC-GCGUaGUUGUgC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 10381 0.69 0.647139
Target:  5'- uCUGAGcgGCuGCGCAcgaagcaagaggcgUCGcGgGCGGCCg -3'
miRNA:   3'- -GGCUCuaCGuCGCGU--------------AGU-UgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 10501 0.73 0.400013
Target:  5'- uCCGAuAUGCcgacuGCGCGUCAu--CGGCCg -3'
miRNA:   3'- -GGCUcUACGu----CGCGUAGUuguGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 10519 0.68 0.683467
Target:  5'- gCCGAucagGCAGCGCucgAUCGAUuccucgcCGGCCu -3'
miRNA:   3'- -GGCUcua-CGUCGCG---UAGUUGu------GCCGG- -5'
24919 3' -53.8 NC_005284.1 + 10571 0.69 0.606242
Target:  5'- uCCGAGAccaccGaCGGCGCAUCGccaaACGuCGGCa -3'
miRNA:   3'- -GGCUCUa----C-GUCGCGUAGU----UGU-GCCGg -5'
24919 3' -53.8 NC_005284.1 + 10661 0.75 0.299619
Target:  5'- gCGAGGaacUGguGCGCGccgcgggcgcgaUCGACACGGCg -3'
miRNA:   3'- gGCUCU---ACguCGCGU------------AGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 11139 0.66 0.807009
Target:  5'- uUCGAGAaauucggcuucaaUGCuGaCGCAgcucgCGcCGCGGCCg -3'
miRNA:   3'- -GGCUCU-------------ACGuC-GCGUa----GUuGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 11329 0.7 0.573284
Target:  5'- uCCGgcagcGGAUcgcGCAacuGCGCGUCGAgGCGGUCg -3'
miRNA:   3'- -GGC-----UCUA---CGU---CGCGUAGUUgUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 11610 0.67 0.747848
Target:  5'- gCCGAGcgucagcgugacGUGCAGCGCGaacUCGGgGCGauGUCg -3'
miRNA:   3'- -GGCUC------------UACGUCGCGU---AGUUgUGC--CGG- -5'
24919 3' -53.8 NC_005284.1 + 11781 0.97 0.010831
Target:  5'- gCCGAGAUcgAGCGCAUCAACACGGCCg -3'
miRNA:   3'- -GGCUCUAcgUCGCGUAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 11806 0.66 0.807963
Target:  5'- nCGAGGcggaGCAggucGCGCGcgAGCGCGGCUa -3'
miRNA:   3'- gGCUCUa---CGU----CGCGUagUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 11970 0.75 0.307191
Target:  5'- gCCGAGGUGCAcuCGUGUCGuuCGCGGCg -3'
miRNA:   3'- -GGCUCUACGUc-GCGUAGUu-GUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 12306 0.67 0.726738
Target:  5'- gCCGGGAUGCuGuCGC-UCGugGaCGuGCCc -3'
miRNA:   3'- -GGCUCUACGuC-GCGuAGUugU-GC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 12751 0.69 0.6394
Target:  5'- cCCGcuGGGUGUAGC-CGUCGccgaACugGGCUu -3'
miRNA:   3'- -GGC--UCUACGUCGcGUAGU----UGugCCGG- -5'
24919 3' -53.8 NC_005284.1 + 13877 0.7 0.599626
Target:  5'- gCCGAauUGCAGUGCAUCAACuACaacgcgacuucguuuGGCg -3'
miRNA:   3'- -GGCUcuACGUCGCGUAGUUG-UG---------------CCGg -5'
24919 3' -53.8 NC_005284.1 + 14269 0.73 0.390866
Target:  5'- aCG-GAUGCGGCGUuacagGACGCGGUCa -3'
miRNA:   3'- gGCuCUACGUCGCGuag--UUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 14586 0.66 0.795425
Target:  5'- gCGAuGGcUGCuGCGCGUCGgaugucugcucgaaGCccGCGGCCu -3'
miRNA:   3'- gGCU-CU-ACGuCGCGUAGU--------------UG--UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 15034 0.7 0.573284
Target:  5'- gCCGAacgGCAGCGCGUUAuuCAC-GCCa -3'
miRNA:   3'- -GGCUcuaCGUCGCGUAGUu-GUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 15138 0.71 0.488075
Target:  5'- aCCGAGAgcgGCGagauauacguGCGCugccgCAACcuuGCGGCCg -3'
miRNA:   3'- -GGCUCUa--CGU----------CGCGua---GUUG---UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 15241 0.71 0.487045
Target:  5'- gCGAGAUugucgcucucGUucauucgcaucccGGCGCAUCGGCACaGCCg -3'
miRNA:   3'- gGCUCUA----------CG-------------UCGCGUAGUUGUGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.