miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 457 0.72 0.437928
Target:  5'- gCGAGccgGCAGCGCcugGUCGGCGCaaaGCCg -3'
miRNA:   3'- gGCUCua-CGUCGCG---UAGUUGUGc--CGG- -5'
24919 3' -53.8 NC_005284.1 + 958 0.71 0.488075
Target:  5'- gCCGAGGUGUacgccGGCGCGaCGACugaaaagcaGGCCu -3'
miRNA:   3'- -GGCUCUACG-----UCGCGUaGUUGug-------CCGG- -5'
24919 3' -53.8 NC_005284.1 + 1275 0.66 0.788552
Target:  5'- aUCGAGggGCcGUGCuUCGACAaGcGCCg -3'
miRNA:   3'- -GGCUCuaCGuCGCGuAGUUGUgC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 1379 0.67 0.758231
Target:  5'- uUCGAGcAuuucgaucaccUGcCGGCGCuuGUCGaaGCACGGCCc -3'
miRNA:   3'- -GGCUC-U-----------AC-GUCGCG--UAGU--UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 1605 0.72 0.466668
Target:  5'- uUCGAGggGCAagauugcgugcucGCGC-UCGACAUGGCg -3'
miRNA:   3'- -GGCUCuaCGU-------------CGCGuAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 2101 0.66 0.817395
Target:  5'- gCCGGGAaaugacgaugUGguGCGCccgAUCaAGCAgGGCa -3'
miRNA:   3'- -GGCUCU----------ACguCGCG---UAG-UUGUgCCGg -5'
24919 3' -53.8 NC_005284.1 + 5932 0.76 0.277774
Target:  5'- gCCGAGAUGCAG-GCggCAGuugcggacgcCACGGCUg -3'
miRNA:   3'- -GGCUCUACGUCgCGuaGUU----------GUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 6579 0.67 0.737346
Target:  5'- uCCGuGAcGaGGCGCGUaAGCGCGcGCCg -3'
miRNA:   3'- -GGCuCUaCgUCGCGUAgUUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 6839 0.68 0.712806
Target:  5'- aCCGAGuugGCGcGCGCgAUCGAUcgugugcucggaggGCGGCg -3'
miRNA:   3'- -GGCUCua-CGU-CGCG-UAGUUG--------------UGCCGg -5'
24919 3' -53.8 NC_005284.1 + 7061 0.67 0.725671
Target:  5'- gUCGAGcgcgccAUGUAcGCGCGUCAcgacgaaAUACGGCg -3'
miRNA:   3'- -GGCUC------UACGU-CGCGUAGU-------UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 7336 0.74 0.364259
Target:  5'- gUCGAGGUGUcgaaAGuUGCGUCGaccgaucucgACGCGGCCg -3'
miRNA:   3'- -GGCUCUACG----UC-GCGUAGU----------UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 8006 0.66 0.807963
Target:  5'- cCCGGcGAUGUcccgaAGCGCuUCGAUccagaacauGCGGUCg -3'
miRNA:   3'- -GGCU-CUACG-----UCGCGuAGUUG---------UGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 8317 0.76 0.257217
Target:  5'- gCCGAGccGCAGCGCGagCGACAUcaggaagcggaGGCCu -3'
miRNA:   3'- -GGCUCuaCGUCGCGUa-GUUGUG-----------CCGG- -5'
24919 3' -53.8 NC_005284.1 + 8710 0.72 0.447725
Target:  5'- ---cGGUGCGcGCGC-UCGACGCGGCg -3'
miRNA:   3'- ggcuCUACGU-CGCGuAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 8878 0.76 0.292193
Target:  5'- aCGAcGUGCuGCGCAUCGcgcgcgacACACGGCa -3'
miRNA:   3'- gGCUcUACGuCGCGUAGU--------UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 9025 0.67 0.744709
Target:  5'- cCCGAGAUGCGaCGCGUUguuugcgauccgcuGAUACaGCUc -3'
miRNA:   3'- -GGCUCUACGUcGCGUAG--------------UUGUGcCGG- -5'
24919 3' -53.8 NC_005284.1 + 9143 0.67 0.758231
Target:  5'- gUCGcGGAUGCuaucGCGCG-CGGCAUGGgCa -3'
miRNA:   3'- -GGC-UCUACGu---CGCGUaGUUGUGCCgG- -5'
24919 3' -53.8 NC_005284.1 + 9422 0.67 0.758231
Target:  5'- aUCGuGAaacuCGGCGUGUCGcuCGCGGCCg -3'
miRNA:   3'- -GGCuCUac--GUCGCGUAGUu-GUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 9558 0.71 0.540763
Target:  5'- aCGAG--GCGGCGCAggCAGCGCucGCCa -3'
miRNA:   3'- gGCUCuaCGUCGCGUa-GUUGUGc-CGG- -5'
24919 3' -53.8 NC_005284.1 + 9764 0.68 0.683467
Target:  5'- gUCGAGgcGaCGGCGCAagcUCAcgucgcaacgGCGCGcGCCa -3'
miRNA:   3'- -GGCUCuaC-GUCGCGU---AGU----------UGUGC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.