Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24919 | 3' | -53.8 | NC_005284.1 | + | 15138 | 0.71 | 0.488075 |
Target: 5'- aCCGAGAgcgGCGagauauacguGCGCugccgCAACcuuGCGGCCg -3' miRNA: 3'- -GGCUCUa--CGU----------CGCGua---GUUG---UGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 42006 | 0.72 | 0.437928 |
Target: 5'- -gGAGGUGCgacAGCGUAUCuucgcgAGCGCGuGCCg -3' miRNA: 3'- ggCUCUACG---UCGCGUAG------UUGUGC-CGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 457 | 0.72 | 0.437928 |
Target: 5'- gCGAGccgGCAGCGCcugGUCGGCGCaaaGCCg -3' miRNA: 3'- gGCUCua-CGUCGCG---UAGUUGUGc--CGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 23586 | 0.72 | 0.447725 |
Target: 5'- gCGGGucgaGCGGUuCAUCGACGCGGCg -3' miRNA: 3'- gGCUCua--CGUCGcGUAGUUGUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 54508 | 0.72 | 0.447725 |
Target: 5'- gUGGGAcaagaucagGCAGCGCAUCuugcgccgcGACAgCGGCCu -3' miRNA: 3'- gGCUCUa--------CGUCGCGUAG---------UUGU-GCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 8710 | 0.72 | 0.447725 |
Target: 5'- ---cGGUGCGcGCGC-UCGACGCGGCg -3' miRNA: 3'- ggcuCUACGU-CGCGuAGUUGUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 1605 | 0.72 | 0.466668 |
Target: 5'- uUCGAGggGCAagauugcgugcucGCGC-UCGACAUGGCg -3' miRNA: 3'- -GGCUCuaCGU-------------CGCGuAGUUGUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 15241 | 0.71 | 0.487045 |
Target: 5'- gCGAGAUugucgcucucGUucauucgcaucccGGCGCAUCGGCACaGCCg -3' miRNA: 3'- gGCUCUA----------CG-------------UCGCGUAGUUGUGcCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 958 | 0.71 | 0.488075 |
Target: 5'- gCCGAGGUGUacgccGGCGCGaCGACugaaaagcaGGCCu -3' miRNA: 3'- -GGCUCUACG-----UCGCGUaGUUGug-------CCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 25659 | 0.73 | 0.428255 |
Target: 5'- aCGGGAagGCGGCGCAgccgUUcGCGCGaGCCa -3' miRNA: 3'- gGCUCUa-CGUCGCGU----AGuUGUGC-CGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 16408 | 0.73 | 0.409295 |
Target: 5'- gCGGGGUGaAGCGCAUC--UACGGCg -3' miRNA: 3'- gGCUCUACgUCGCGUAGuuGUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 14269 | 0.73 | 0.390866 |
Target: 5'- aCG-GAUGCGGCGUuacagGACGCGGUCa -3' miRNA: 3'- gGCuCUACGUCGCGuag--UUGUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 34288 | 0.81 | 0.123703 |
Target: 5'- gUCGcGAUGUgcucguccgucAGCGCAUCAGCGCGGCUc -3' miRNA: 3'- -GGCuCUACG-----------UCGCGUAGUUGUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 21773 | 0.78 | 0.197595 |
Target: 5'- aCUGAGcgGCuGCGCGUCGcuguccgacacuGCACGGCa -3' miRNA: 3'- -GGCUCuaCGuCGCGUAGU------------UGUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 5932 | 0.76 | 0.277774 |
Target: 5'- gCCGAGAUGCAG-GCggCAGuugcggacgcCACGGCUg -3' miRNA: 3'- -GGCUCUACGUCgCGuaGUU----------GUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 8878 | 0.76 | 0.292193 |
Target: 5'- aCGAcGUGCuGCGCAUCGcgcgcgacACACGGCa -3' miRNA: 3'- gGCUcUACGuCGCGUAGU--------UGUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 10661 | 0.75 | 0.299619 |
Target: 5'- gCGAGGaacUGguGCGCGccgcgggcgcgaUCGACACGGCg -3' miRNA: 3'- gGCUCU---ACguCGCGU------------AGUUGUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 39817 | 0.75 | 0.299619 |
Target: 5'- aCCGGGccgcGUGCcGCauuGCAUgGGCGCGGCCg -3' miRNA: 3'- -GGCUC----UACGuCG---CGUAgUUGUGCCGG- -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 11970 | 0.75 | 0.307191 |
Target: 5'- gCCGAGGUGCAcuCGUGUCGuuCGCGGCg -3' miRNA: 3'- -GGCUCUACGUc-GCGUAGUu-GUGCCGg -5' |
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24919 | 3' | -53.8 | NC_005284.1 | + | 7336 | 0.74 | 0.364259 |
Target: 5'- gUCGAGGUGUcgaaAGuUGCGUCGaccgaucucgACGCGGCCg -3' miRNA: 3'- -GGCUCUACG----UC-GCGUAGU----------UGUGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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