miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24919 3' -53.8 NC_005284.1 + 11781 0.97 0.010831
Target:  5'- gCCGAGAUcgAGCGCAUCAACACGGCCg -3'
miRNA:   3'- -GGCUCUAcgUCGCGUAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 34288 0.81 0.123703
Target:  5'- gUCGcGAUGUgcucguccgucAGCGCAUCAGCGCGGCUc -3'
miRNA:   3'- -GGCuCUACG-----------UCGCGUAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 21773 0.78 0.197595
Target:  5'- aCUGAGcgGCuGCGCGUCGcuguccgacacuGCACGGCa -3'
miRNA:   3'- -GGCUCuaCGuCGCGUAGU------------UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 8317 0.76 0.257217
Target:  5'- gCCGAGccGCAGCGCGagCGACAUcaggaagcggaGGCCu -3'
miRNA:   3'- -GGCUCuaCGUCGCGUa-GUUGUG-----------CCGG- -5'
24919 3' -53.8 NC_005284.1 + 5932 0.76 0.277774
Target:  5'- gCCGAGAUGCAG-GCggCAGuugcggacgcCACGGCUg -3'
miRNA:   3'- -GGCUCUACGUCgCGuaGUU----------GUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 8878 0.76 0.292193
Target:  5'- aCGAcGUGCuGCGCAUCGcgcgcgacACACGGCa -3'
miRNA:   3'- gGCUcUACGuCGCGUAGU--------UGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 10661 0.75 0.299619
Target:  5'- gCGAGGaacUGguGCGCGccgcgggcgcgaUCGACACGGCg -3'
miRNA:   3'- gGCUCU---ACguCGCGU------------AGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 39817 0.75 0.299619
Target:  5'- aCCGGGccgcGUGCcGCauuGCAUgGGCGCGGCCg -3'
miRNA:   3'- -GGCUC----UACGuCG---CGUAgUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 11970 0.75 0.307191
Target:  5'- gCCGAGGUGCAcuCGUGUCGuuCGCGGCg -3'
miRNA:   3'- -GGCUCUACGUc-GCGUAGUu-GUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 7336 0.74 0.364259
Target:  5'- gUCGAGGUGUcgaaAGuUGCGUCGaccgaucucgACGCGGCCg -3'
miRNA:   3'- -GGCUCUACG----UC-GCGUAGU----------UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 15268 0.74 0.372988
Target:  5'- uCCGAc--GCgAGCGCgaacuggucgGUCGGCACGGCCg -3'
miRNA:   3'- -GGCUcuaCG-UCGCG----------UAGUUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 21661 0.73 0.389959
Target:  5'- uUCGGcAUGCcgcuGCGCGUCGaacgcccGCGCGGCCu -3'
miRNA:   3'- -GGCUcUACGu---CGCGUAGU-------UGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 14269 0.73 0.390866
Target:  5'- aCG-GAUGCGGCGUuacagGACGCGGUCa -3'
miRNA:   3'- gGCuCUACGUCGCGuag--UUGUGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 10501 0.73 0.400013
Target:  5'- uCCGAuAUGCcgacuGCGCGUCAu--CGGCCg -3'
miRNA:   3'- -GGCUcUACGu----CGCGUAGUuguGCCGG- -5'
24919 3' -53.8 NC_005284.1 + 16408 0.73 0.409295
Target:  5'- gCGGGGUGaAGCGCAUC--UACGGCg -3'
miRNA:   3'- gGCUCUACgUCGCGUAGuuGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 25659 0.73 0.428255
Target:  5'- aCGGGAagGCGGCGCAgccgUUcGCGCGaGCCa -3'
miRNA:   3'- gGCUCUa-CGUCGCGU----AGuUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 457 0.72 0.437928
Target:  5'- gCGAGccgGCAGCGCcugGUCGGCGCaaaGCCg -3'
miRNA:   3'- gGCUCua-CGUCGCG---UAGUUGUGc--CGG- -5'
24919 3' -53.8 NC_005284.1 + 42006 0.72 0.437928
Target:  5'- -gGAGGUGCgacAGCGUAUCuucgcgAGCGCGuGCCg -3'
miRNA:   3'- ggCUCUACG---UCGCGUAG------UUGUGC-CGG- -5'
24919 3' -53.8 NC_005284.1 + 23586 0.72 0.447725
Target:  5'- gCGGGucgaGCGGUuCAUCGACGCGGCg -3'
miRNA:   3'- gGCUCua--CGUCGcGUAGUUGUGCCGg -5'
24919 3' -53.8 NC_005284.1 + 54508 0.72 0.447725
Target:  5'- gUGGGAcaagaucagGCAGCGCAUCuugcgccgcGACAgCGGCCu -3'
miRNA:   3'- gGCUCUa--------CGUCGCGUAG---------UUGU-GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.