miRNA display CGI


Results 41 - 60 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24925 3' -57.9 NC_005284.1 + 34101 0.67 0.511296
Target:  5'- cGUGCCGaCAccguaaaacugCACGCCGAuCGC-CACAu -3'
miRNA:   3'- -CGCGGC-GUa----------GUGCGGCUuGCGcGUGU- -5'
24925 3' -57.9 NC_005284.1 + 50249 0.67 0.511296
Target:  5'- gGCGCCG-AUCGCGuuGcgcAACGacuGCGCAg -3'
miRNA:   3'- -CGCGGCgUAGUGCggC---UUGCg--CGUGU- -5'
24925 3' -57.9 NC_005284.1 + 45107 0.67 0.511296
Target:  5'- cGCGUCGUuguccGUCAccuCGCC-AAUGCGCACc -3'
miRNA:   3'- -CGCGGCG-----UAGU---GCGGcUUGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 11908 0.67 0.511296
Target:  5'- -aGCCGCugcUCGagauaGCCGcgcuCGCGCGCGa -3'
miRNA:   3'- cgCGGCGu--AGUg----CGGCuu--GCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 49172 0.67 0.511296
Target:  5'- cGCGCUGC-UCgAUGCCGAGuugcuuacCGCGguCAg -3'
miRNA:   3'- -CGCGGCGuAG-UGCGGCUU--------GCGCguGU- -5'
24925 3' -57.9 NC_005284.1 + 9240 0.67 0.509244
Target:  5'- uGCGCCGaacucuugccCAUGCCGcGCGCGauaGCAu -3'
miRNA:   3'- -CGCGGCgua-------GUGCGGCuUGCGCg--UGU- -5'
24925 3' -57.9 NC_005284.1 + 10653 0.67 0.507195
Target:  5'- aGCGCUGCGcgaggaacuggugCGCGCCGcGgGCGCGa- -3'
miRNA:   3'- -CGCGGCGUa------------GUGCGGCuUgCGCGUgu -5'
24925 3' -57.9 NC_005284.1 + 48441 0.67 0.505149
Target:  5'- uCGCCGCGUgCAgugcaguaccagcuuCGCCGGAUGCaGCAg- -3'
miRNA:   3'- cGCGGCGUA-GU---------------GCGGCUUGCG-CGUgu -5'
24925 3' -57.9 NC_005284.1 + 9319 0.67 0.50107
Target:  5'- cGUGCCGCc---CGCCGcGCGCGUcaGCGc -3'
miRNA:   3'- -CGCGGCGuaguGCGGCuUGCGCG--UGU- -5'
24925 3' -57.9 NC_005284.1 + 31440 0.67 0.50107
Target:  5'- uGCGCCGCugcggCGCGCCGGGCcCcCAa- -3'
miRNA:   3'- -CGCGGCGua---GUGCGGCUUGcGcGUgu -5'
24925 3' -57.9 NC_005284.1 + 19226 0.67 0.50107
Target:  5'- cGUGgCGCAguccUACGCCGAucugaacggACGCGuCGCGg -3'
miRNA:   3'- -CGCgGCGUa---GUGCGGCU---------UGCGC-GUGU- -5'
24925 3' -57.9 NC_005284.1 + 47833 0.67 0.50107
Target:  5'- gGUGCUcgGCAUUgacgACGCgGAAaGCGCACAg -3'
miRNA:   3'- -CGCGG--CGUAG----UGCGgCUUgCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 21991 0.67 0.500052
Target:  5'- cGCGCUGauCGUCgccggcgACGCCGAaaACGCGUuccGCAa -3'
miRNA:   3'- -CGCGGC--GUAG-------UGCGGCU--UGCGCG---UGU- -5'
24925 3' -57.9 NC_005284.1 + 53115 0.67 0.494977
Target:  5'- cGCGCUaCAUCACGCCucgcacggcgaaacaGGACGCGgugACAu -3'
miRNA:   3'- -CGCGGcGUAGUGCGG---------------CUUGCGCg--UGU- -5'
24925 3' -57.9 NC_005284.1 + 12823 0.67 0.490934
Target:  5'- cCGCCGCuUCGCGCC---CGCGgACu -3'
miRNA:   3'- cGCGGCGuAGUGCGGcuuGCGCgUGu -5'
24925 3' -57.9 NC_005284.1 + 54661 0.68 0.480895
Target:  5'- cUGCCGUgacuGUCACGCgGcgaaGACGgCGCGCGa -3'
miRNA:   3'- cGCGGCG----UAGUGCGgC----UUGC-GCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 8689 0.68 0.470956
Target:  5'- aCGCCGCAagcgugcaggUCACGgU--GCGCGCGCu -3'
miRNA:   3'- cGCGGCGU----------AGUGCgGcuUGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 48980 0.68 0.470956
Target:  5'- gGCGgCGCAgcgacaccuUCGcCGCCGGGCGUGUccACGg -3'
miRNA:   3'- -CGCgGCGU---------AGU-GCGGCUUGCGCG--UGU- -5'
24925 3' -57.9 NC_005284.1 + 16700 0.68 0.461124
Target:  5'- cGUGCCGCugacguccgaCGCGCCGuGgGUGCGCc -3'
miRNA:   3'- -CGCGGCGua--------GUGCGGCuUgCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 30778 0.68 0.4514
Target:  5'- cGCGUC-CAUUAUGCaGAGCGCGUcgGCAa -3'
miRNA:   3'- -CGCGGcGUAGUGCGgCUUGCGCG--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.