miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24925 5' -55.5 NC_005284.1 + 11777 0.72 0.393233
Target:  5'- cAUCGCCGAgaucgaGCGcAUCAACacgGcCGAGGCg -3'
miRNA:   3'- -UAGCGGCUg-----CGC-UAGUUG---CaGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 11938 0.66 0.699878
Target:  5'- -aCGCCGACGCGccagucggccugCAACG-CGAGccGCu -3'
miRNA:   3'- uaGCGGCUGCGCua----------GUUGCaGCUC--CG- -5'
24925 5' -55.5 NC_005284.1 + 12037 0.69 0.552278
Target:  5'- gAUCGCCGaccucGCGCGGuuuUCGGCG-CGugcGGCg -3'
miRNA:   3'- -UAGCGGC-----UGCGCU---AGUUGCaGCu--CCG- -5'
24925 5' -55.5 NC_005284.1 + 12406 0.7 0.473338
Target:  5'- uUCGCCGGCGCGcAacggcgggaucucggUCAGCGcgccaguuucgaUCGAGGg -3'
miRNA:   3'- uAGCGGCUGCGC-U---------------AGUUGC------------AGCUCCg -5'
24925 5' -55.5 NC_005284.1 + 13321 0.75 0.247339
Target:  5'- cGUCGCCGAgCGCGGUCGaaugAUGUgggaCGAGGUu -3'
miRNA:   3'- -UAGCGGCU-GCGCUAGU----UGCA----GCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 13598 0.7 0.499765
Target:  5'- cGUCGuuGACGCGAaacgUAugGUCGcugaguAGGUa -3'
miRNA:   3'- -UAGCggCUGCGCUa---GUugCAGC------UCCG- -5'
24925 5' -55.5 NC_005284.1 + 14514 0.67 0.639092
Target:  5'- cUUGCC-ACaCGAUCGACGUCGAcuGCa -3'
miRNA:   3'- uAGCGGcUGcGCUAGUUGCAGCUc-CG- -5'
24925 5' -55.5 NC_005284.1 + 14527 0.69 0.52053
Target:  5'- cAUCGCCGACGCuGcgggugggcgacAUCAACGgaaCGAuuucGGCg -3'
miRNA:   3'- -UAGCGGCUGCG-C------------UAGUUGCa--GCU----CCG- -5'
24925 5' -55.5 NC_005284.1 + 14724 0.74 0.287925
Target:  5'- gAUUGCCGGC-CGGaaaauUCAcgGCGUCGAGGUa -3'
miRNA:   3'- -UAGCGGCUGcGCU-----AGU--UGCAGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 15273 0.66 0.725416
Target:  5'- aGUCcuCCGACGCGAgcgCGAacugGUCGGucGGCa -3'
miRNA:   3'- -UAGc-GGCUGCGCUa--GUUg---CAGCU--CCG- -5'
24925 5' -55.5 NC_005284.1 + 15687 0.74 0.276614
Target:  5'- cGUCGCCGAccugcaacgucacguCGCGGcCGACGUCGAGa- -3'
miRNA:   3'- -UAGCGGCU---------------GCGCUaGUUGCAGCUCcg -5'
24925 5' -55.5 NC_005284.1 + 15726 0.7 0.449583
Target:  5'- cGUCuGUCGACGCGcgCggUGU-GGGGCg -3'
miRNA:   3'- -UAG-CGGCUGCGCuaGuuGCAgCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 16163 0.74 0.273842
Target:  5'- cAUCGCUGAUGgGGcUCGgcGCGUCGAuGGCg -3'
miRNA:   3'- -UAGCGGCUGCgCU-AGU--UGCAGCU-CCG- -5'
24925 5' -55.5 NC_005284.1 + 16503 0.69 0.510103
Target:  5'- -gUGCuCGACGUGAUCu-CGgCGGGGCc -3'
miRNA:   3'- uaGCG-GCUGCGCUAGuuGCaGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 16756 0.67 0.650012
Target:  5'- -aCGCCGACGcCGGccUC-ACGcUCGAcGGCc -3'
miRNA:   3'- uaGCGGCUGC-GCU--AGuUGC-AGCU-CCG- -5'
24925 5' -55.5 NC_005284.1 + 16779 0.69 0.510103
Target:  5'- -gUGCCGGCGCuacagcGUCAggacACGUCGAacGGCa -3'
miRNA:   3'- uaGCGGCUGCGc-----UAGU----UGCAGCU--CCG- -5'
24925 5' -55.5 NC_005284.1 + 16831 0.71 0.411507
Target:  5'- -gCGUCGACuauGCGAUCGACuugucgGUCGAcGGCg -3'
miRNA:   3'- uaGCGGCUG---CGCUAGUUG------CAGCU-CCG- -5'
24925 5' -55.5 NC_005284.1 + 17011 1.1 0.000817
Target:  5'- gAUCGCCGACGCGAUCAACGUCGAGGCg -3'
miRNA:   3'- -UAGCGGCUGCGCUAGUUGCAGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 17065 0.72 0.393233
Target:  5'- cGUCGCCGuguGCGCGuUCGGCGUgaUGcGGCg -3'
miRNA:   3'- -UAGCGGC---UGCGCuAGUUGCA--GCuCCG- -5'
24925 5' -55.5 NC_005284.1 + 18019 0.72 0.375494
Target:  5'- gAUCGCCGGCgGCGAuugUCGGCGccuugUCGAGcGUg -3'
miRNA:   3'- -UAGCGGCUG-CGCU---AGUUGC-----AGCUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.