miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24925 5' -55.5 NC_005284.1 + 968 0.66 0.704164
Target:  5'- -aCGCCGGCGCGA-CGACugaaaaGcAGGCc -3'
miRNA:   3'- uaGCGGCUGCGCUaGUUGcag---C-UCCG- -5'
24925 5' -55.5 NC_005284.1 + 3067 0.68 0.617242
Target:  5'- aGUUGCUggaGACGCGGgcauUCAACaUCGAGGa -3'
miRNA:   3'- -UAGCGG---CUGCGCU----AGUUGcAGCUCCg -5'
24925 5' -55.5 NC_005284.1 + 3670 0.66 0.734865
Target:  5'- cAUCGUCGAC-UGAcUUGACGUCGAgaucaaaGGCa -3'
miRNA:   3'- -UAGCGGCUGcGCU-AGUUGCAGCU-------CCG- -5'
24925 5' -55.5 NC_005284.1 + 4105 0.66 0.704164
Target:  5'- -cCGCCGuGCGCGAugaucgauuUCAccGCGUCGAuucGCg -3'
miRNA:   3'- uaGCGGC-UGCGCU---------AGU--UGCAGCUc--CG- -5'
24925 5' -55.5 NC_005284.1 + 6792 0.67 0.650012
Target:  5'- --gGCCGGCGUuuGAU--GCGUCGAucGGCg -3'
miRNA:   3'- uagCGGCUGCG--CUAguUGCAGCU--CCG- -5'
24925 5' -55.5 NC_005284.1 + 7065 0.66 0.73591
Target:  5'- -gCGCCGACGUucacCGACGcCGAucGGCu -3'
miRNA:   3'- uaGCGGCUGCGcua-GUUGCaGCU--CCG- -5'
24925 5' -55.5 NC_005284.1 + 7155 0.66 0.71483
Target:  5'- --aGUCGGCaagcCGAUCGGCGUCGGugaacgucGGCg -3'
miRNA:   3'- uagCGGCUGc---GCUAGUUGCAGCU--------CCG- -5'
24925 5' -55.5 NC_005284.1 + 8597 0.76 0.206101
Target:  5'- -cCGCCGcauGCGCGGUCucuCGUCGAcGGCc -3'
miRNA:   3'- uaGCGGC---UGCGCUAGuu-GCAGCU-CCG- -5'
24925 5' -55.5 NC_005284.1 + 8635 0.67 0.660917
Target:  5'- uUCGCCGuaACGCugacGAUCAGCucgCGaAGGCu -3'
miRNA:   3'- uAGCGGC--UGCG----CUAGUUGca-GC-UCCG- -5'
24925 5' -55.5 NC_005284.1 + 8804 0.67 0.660917
Target:  5'- uUCGCgGAucgaacUGCGcgCcGCGUCGAGcGCg -3'
miRNA:   3'- uAGCGgCU------GCGCuaGuUGCAGCUC-CG- -5'
24925 5' -55.5 NC_005284.1 + 9239 0.7 0.489521
Target:  5'- -gCGCUGACGCGcgCGGCGg-GcGGCa -3'
miRNA:   3'- uaGCGGCUGCGCuaGUUGCagCuCCG- -5'
24925 5' -55.5 NC_005284.1 + 9672 0.68 0.57053
Target:  5'- uUCGCCGcCGCGG-CAGCG-CGAucgcccugcgcuuuGGCg -3'
miRNA:   3'- uAGCGGCuGCGCUaGUUGCaGCU--------------CCG- -5'
24925 5' -55.5 NC_005284.1 + 9746 0.72 0.349919
Target:  5'- cUUGCCGaaGCGCGggCG--GUCGAGGCg -3'
miRNA:   3'- uAGCGGC--UGCGCuaGUugCAGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 9787 0.72 0.358304
Target:  5'- cGUCGCaaCGGCGCGcgcCAACGUCGccGGCa -3'
miRNA:   3'- -UAGCG--GCUGCGCua-GUUGCAGCu-CCG- -5'
24925 5' -55.5 NC_005284.1 + 10546 0.67 0.637999
Target:  5'- cUCGCCGGCcugGAUCGccucaagACGUCGAaccucGGCg -3'
miRNA:   3'- uAGCGGCUGcg-CUAGU-------UGCAGCU-----CCG- -5'
24925 5' -55.5 NC_005284.1 + 10647 0.8 0.123011
Target:  5'- cUCGUCGACGcCGAgguUCGACGUCuuGAGGCg -3'
miRNA:   3'- uAGCGGCUGC-GCU---AGUUGCAG--CUCCG- -5'
24925 5' -55.5 NC_005284.1 + 10679 0.71 0.411507
Target:  5'- -cCGCgGGCGCGAUCGACacggCG-GGCc -3'
miRNA:   3'- uaGCGgCUGCGCUAGUUGca--GCuCCG- -5'
24925 5' -55.5 NC_005284.1 + 10804 0.66 0.725416
Target:  5'- uUCGCCGGCG-GAaUGGCaUCgGAGGCg -3'
miRNA:   3'- uAGCGGCUGCgCUaGUUGcAG-CUCCG- -5'
24925 5' -55.5 NC_005284.1 + 11319 0.69 0.540562
Target:  5'- cUCGacaacauCCGGCaGCgGAUCGcgcaacugcGCGUCGAGGCg -3'
miRNA:   3'- uAGC-------GGCUG-CG-CUAGU---------UGCAGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 11541 0.69 0.552278
Target:  5'- uAUCG-CGACGCGAUCAAC----AGGCu -3'
miRNA:   3'- -UAGCgGCUGCGCUAGUUGcagcUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.