miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24925 5' -55.5 NC_005284.1 + 17011 1.1 0.000817
Target:  5'- gAUCGCCGACGCGAUCAACGUCGAGGCg -3'
miRNA:   3'- -UAGCGGCUGCGCUAGUUGCAGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 47512 0.86 0.046687
Target:  5'- uAUCGCCGuCGUGuUCGGCGUCGAGGUg -3'
miRNA:   3'- -UAGCGGCuGCGCuAGUUGCAGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 21916 0.81 0.095587
Target:  5'- cGUCGCCGGCGaCGAUCAGCG-CGAGa- -3'
miRNA:   3'- -UAGCGGCUGC-GCUAGUUGCaGCUCcg -5'
24925 5' -55.5 NC_005284.1 + 10647 0.8 0.123011
Target:  5'- cUCGUCGACGcCGAgguUCGACGUCuuGAGGCg -3'
miRNA:   3'- uAGCGGCUGC-GCU---AGUUGCAG--CUCCG- -5'
24925 5' -55.5 NC_005284.1 + 37155 0.79 0.133674
Target:  5'- cUCGCCGGCGCG-UCGAUggcgGUCGAGGa -3'
miRNA:   3'- uAGCGGCUGCGCuAGUUG----CAGCUCCg -5'
24925 5' -55.5 NC_005284.1 + 8597 0.76 0.206101
Target:  5'- -cCGCCGcauGCGCGGUCucuCGUCGAcGGCc -3'
miRNA:   3'- uaGCGGC---UGCGCUAGuu-GCAGCU-CCG- -5'
24925 5' -55.5 NC_005284.1 + 31230 0.76 0.206101
Target:  5'- cGUUGCCGAUGCGcuucGUCAGCaacaaccaGUCGAGGUu -3'
miRNA:   3'- -UAGCGGCUGCGC----UAGUUG--------CAGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 13321 0.75 0.247339
Target:  5'- cGUCGCCGAgCGCGGUCGaaugAUGUgggaCGAGGUu -3'
miRNA:   3'- -UAGCGGCU-GCGCUAGU----UGCA----GCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 16163 0.74 0.273842
Target:  5'- cAUCGCUGAUGgGGcUCGgcGCGUCGAuGGCg -3'
miRNA:   3'- -UAGCGGCUGCgCU-AGU--UGCAGCU-CCG- -5'
24925 5' -55.5 NC_005284.1 + 15687 0.74 0.276614
Target:  5'- cGUCGCCGAccugcaacgucacguCGCGGcCGACGUCGAGa- -3'
miRNA:   3'- -UAGCGGCU---------------GCGCUaGUUGCAGCUCcg -5'
24925 5' -55.5 NC_005284.1 + 27496 0.74 0.280813
Target:  5'- -gCGCCcacgGugGCGAUgAucgaugggcGCGUCGAGGCg -3'
miRNA:   3'- uaGCGG----CugCGCUAgU---------UGCAGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 14724 0.74 0.287925
Target:  5'- gAUUGCCGGC-CGGaaaauUCAcgGCGUCGAGGUa -3'
miRNA:   3'- -UAGCGGCUGcGCU-----AGU--UGCAGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 47291 0.74 0.302573
Target:  5'- cGUCGCCG-CGUGAUCAACGcgcgCGAG-Cu -3'
miRNA:   3'- -UAGCGGCuGCGCUAGUUGCa---GCUCcG- -5'
24925 5' -55.5 NC_005284.1 + 34818 0.73 0.310108
Target:  5'- gGUCGCCGAUcauauCGAUC-ACGUCGuuGGCg -3'
miRNA:   3'- -UAGCGGCUGc----GCUAGuUGCAGCu-CCG- -5'
24925 5' -55.5 NC_005284.1 + 9746 0.72 0.349919
Target:  5'- cUUGCCGaaGCGCGggCG--GUCGAGGCg -3'
miRNA:   3'- uAGCGGC--UGCGCuaGUugCAGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 9787 0.72 0.358304
Target:  5'- cGUCGCaaCGGCGCGcgcCAACGUCGccGGCa -3'
miRNA:   3'- -UAGCG--GCUGCGCua-GUUGCAGCu-CCG- -5'
24925 5' -55.5 NC_005284.1 + 49504 0.72 0.358304
Target:  5'- gGUCGCCgGAUGCGAUUu-CGUCGAauucggaguucGGCu -3'
miRNA:   3'- -UAGCGG-CUGCGCUAGuuGCAGCU-----------CCG- -5'
24925 5' -55.5 NC_005284.1 + 21740 0.72 0.359151
Target:  5'- -cCGCCGACGCGgcggcaucgugcgcGgcgaucgcacgcugcUCGGCGUCGAGcGCg -3'
miRNA:   3'- uaGCGGCUGCGC--------------U---------------AGUUGCAGCUC-CG- -5'
24925 5' -55.5 NC_005284.1 + 45154 0.72 0.36683
Target:  5'- cGUgGUCGACGCacggCGACGUCG-GGCa -3'
miRNA:   3'- -UAgCGGCUGCGcua-GUUGCAGCuCCG- -5'
24925 5' -55.5 NC_005284.1 + 34899 0.72 0.372881
Target:  5'- cAUCGCCGACaGCGAgcucgucgugcauaUCGGuaguuCGUCGAGcGCa -3'
miRNA:   3'- -UAGCGGCUG-CGCU--------------AGUU-----GCAGCUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.