miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24930 3' -55.1 NC_005284.1 + 54241 0.66 0.73378
Target:  5'- cGGCaUUGCCUugAGgGcUUGGGCgGCu -3'
miRNA:   3'- cUCGaAGCGGAugUUgU-AGCCCGgCG- -5'
24930 3' -55.1 NC_005284.1 + 4611 0.66 0.723123
Target:  5'- aGAGCaucaugaacgUGCCUGCGACGgUCGGcaGCgGCg -3'
miRNA:   3'- -CUCGaa--------GCGGAUGUUGU-AGCC--CGgCG- -5'
24930 3' -55.1 NC_005284.1 + 15692 0.66 0.723123
Target:  5'- cAGCacgUCGCCgaccUGCAacgucACGUCGcGGCCGa -3'
miRNA:   3'- cUCGa--AGCGG----AUGU-----UGUAGC-CCGGCg -5'
24930 3' -55.1 NC_005284.1 + 10207 0.66 0.723123
Target:  5'- cGAGCgcCGUCUGCGcCGUC--GCCGCg -3'
miRNA:   3'- -CUCGaaGCGGAUGUuGUAGccCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 37928 0.66 0.723123
Target:  5'- cGGCUUCGCgCUAUGuGCGcUCGGaGUCGUg -3'
miRNA:   3'- cUCGAAGCG-GAUGU-UGU-AGCC-CGGCG- -5'
24930 3' -55.1 NC_005284.1 + 42620 0.66 0.712374
Target:  5'- cGGGCUcguuaUCGCCaGCuACGagGGGCCa- -3'
miRNA:   3'- -CUCGA-----AGCGGaUGuUGUagCCCGGcg -5'
24930 3' -55.1 NC_005284.1 + 159 0.66 0.701545
Target:  5'- cGGCUUgGUC-ACgAACAUCGaGCCGCc -3'
miRNA:   3'- cUCGAAgCGGaUG-UUGUAGCcCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 5841 0.66 0.695014
Target:  5'- aGGggUUGCCgACGaucugaucaagaucuACAUCGGcGCCGCa -3'
miRNA:   3'- cUCgaAGCGGaUGU---------------UGUAGCC-CGGCG- -5'
24930 3' -55.1 NC_005284.1 + 27225 0.67 0.668694
Target:  5'- gGAGCUccgcaguugcaUCGCagaUGCGucGCggCGGGCaCGCg -3'
miRNA:   3'- -CUCGA-----------AGCGg--AUGU--UGuaGCCCG-GCG- -5'
24930 3' -55.1 NC_005284.1 + 44895 0.67 0.668694
Target:  5'- -cGCcgUCGCUcACAACAUCcGGGCgggUGCg -3'
miRNA:   3'- cuCGa-AGCGGaUGUUGUAG-CCCG---GCG- -5'
24930 3' -55.1 NC_005284.1 + 45530 0.67 0.657659
Target:  5'- cGAGCaacuggUCGCCcgACAAUcgCGacGCCGCg -3'
miRNA:   3'- -CUCGa-----AGCGGa-UGUUGuaGCc-CGGCG- -5'
24930 3' -55.1 NC_005284.1 + 50319 0.67 0.635529
Target:  5'- cAGCgUCGCCguucGCGUCaGGCUGCu -3'
miRNA:   3'- cUCGaAGCGGauguUGUAGcCCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 34036 0.67 0.624453
Target:  5'- cAGCagCGCCggcCGACGagCGGGCgGCg -3'
miRNA:   3'- cUCGaaGCGGau-GUUGUa-GCCCGgCG- -5'
24930 3' -55.1 NC_005284.1 + 11705 0.68 0.613385
Target:  5'- cGAGUUUCGCCgucgACGggacgaacugACGaaGGGCgCGCg -3'
miRNA:   3'- -CUCGAAGCGGa---UGU----------UGUagCCCG-GCG- -5'
24930 3' -55.1 NC_005284.1 + 11931 0.68 0.613385
Target:  5'- -cGCgccagUCgGCCUGCAACG-CGaGCCGCu -3'
miRNA:   3'- cuCGa----AG-CGGAUGUUGUaGCcCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 8576 0.68 0.580316
Target:  5'- --aCUUCGCCaUGC-GCAUCaGGGCgGCu -3'
miRNA:   3'- cucGAAGCGG-AUGuUGUAG-CCCGgCG- -5'
24930 3' -55.1 NC_005284.1 + 19030 0.68 0.580316
Target:  5'- cGGCgaUCGCCgaggGCGAUAUgGcGGUCGCg -3'
miRNA:   3'- cUCGa-AGCGGa---UGUUGUAgC-CCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 49371 0.68 0.569368
Target:  5'- cAGCUUCGCCgagcGCgAGCuggCGcGCCGCa -3'
miRNA:   3'- cUCGAAGCGGa---UG-UUGua-GCcCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 22101 0.68 0.558472
Target:  5'- -uGCUU-GCCUACGuaggCGGGCCGg -3'
miRNA:   3'- cuCGAAgCGGAUGUuguaGCCCGGCg -5'
24930 3' -55.1 NC_005284.1 + 43221 0.69 0.547636
Target:  5'- ----aUCGCCgcgaaagGCGGCuAUCaGGGCCGCg -3'
miRNA:   3'- cucgaAGCGGa------UGUUG-UAG-CCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.