miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24930 5' -58 NC_005284.1 + 21298 1.08 0.00057
Target:  5'- gCGGCAGCACAACGGCGAGGCGGUUCAa -3'
miRNA:   3'- -GCCGUCGUGUUGCCGCUCCGCCAAGU- -5'
24930 5' -58 NC_005284.1 + 13359 0.77 0.111528
Target:  5'- uCGGCGGCAagcugacggugGGCGGCGAucugucugcGGCGGUUCAa -3'
miRNA:   3'- -GCCGUCGUg----------UUGCCGCU---------CCGCCAAGU- -5'
24930 5' -58 NC_005284.1 + 46525 0.75 0.163606
Target:  5'- uCGGCGGCAUu-CGGCGAcGGCgaucGGUUCGu -3'
miRNA:   3'- -GCCGUCGUGuuGCCGCU-CCG----CCAAGU- -5'
24930 5' -58 NC_005284.1 + 11259 0.75 0.168064
Target:  5'- gCGGCAGCgGCucgcGCGGCGAaggggGGCGGUguUCAu -3'
miRNA:   3'- -GCCGUCG-UGu---UGCCGCU-----CCGCCA--AGU- -5'
24930 5' -58 NC_005284.1 + 3238 0.75 0.172169
Target:  5'- aGGCAGCGCGACGGUcccugcuGAGGcCGGg--- -3'
miRNA:   3'- gCCGUCGUGUUGCCG-------CUCC-GCCaagu -5'
24930 5' -58 NC_005284.1 + 45652 0.73 0.207789
Target:  5'- uGGCGGCucguCggUGcGCGAGGCGGUg-- -3'
miRNA:   3'- gCCGUCGu---GuuGC-CGCUCCGCCAagu -5'
24930 5' -58 NC_005284.1 + 409 0.73 0.21329
Target:  5'- gCGGCGGCGCaAAUGGCGAGuuuCGGcgCAa -3'
miRNA:   3'- -GCCGUCGUG-UUGCCGCUCc--GCCaaGU- -5'
24930 5' -58 NC_005284.1 + 12410 0.72 0.236554
Target:  5'- cCGGC-GCGCAACGGCGGGaucuCGG-UCAg -3'
miRNA:   3'- -GCCGuCGUGUUGCCGCUCc---GCCaAGU- -5'
24930 5' -58 NC_005284.1 + 31541 0.72 0.242693
Target:  5'- cCGGCGGCACGGCGGUcaauugGGGGCccGGcgCGc -3'
miRNA:   3'- -GCCGUCGUGUUGCCG------CUCCG--CCaaGU- -5'
24930 5' -58 NC_005284.1 + 38591 0.72 0.261908
Target:  5'- uCGGCcgAGCGCAcGCGGCGAGuaGG-UCAu -3'
miRNA:   3'- -GCCG--UCGUGU-UGCCGCUCcgCCaAGU- -5'
24930 5' -58 NC_005284.1 + 21806 0.71 0.275394
Target:  5'- aCGGCAGCcggugGCGACGGCGugcccGGCGcUUCc -3'
miRNA:   3'- -GCCGUCG-----UGUUGCCGCu----CCGCcAAGu -5'
24930 5' -58 NC_005284.1 + 12183 0.71 0.275394
Target:  5'- aCGGCuuucaucuCGCGACgGGCGGGGCGGUg-- -3'
miRNA:   3'- -GCCGuc------GUGUUG-CCGCUCCGCCAagu -5'
24930 5' -58 NC_005284.1 + 19797 0.71 0.282342
Target:  5'- aCGGCAGCGCGGCGGCaGAucucucGcGCGGg--- -3'
miRNA:   3'- -GCCGUCGUGUUGCCG-CU------C-CGCCaagu -5'
24930 5' -58 NC_005284.1 + 30422 0.71 0.289429
Target:  5'- -cGCGuGCGCGACGGCGAGGUGcuGUUUc -3'
miRNA:   3'- gcCGU-CGUGUUGCCGCUCCGC--CAAGu -5'
24930 5' -58 NC_005284.1 + 3416 0.71 0.311524
Target:  5'- gGGUGGCaauGCAGCGGUGuuGaCGGUUCAg -3'
miRNA:   3'- gCCGUCG---UGUUGCCGCucC-GCCAAGU- -5'
24930 5' -58 NC_005284.1 + 8445 0.7 0.316861
Target:  5'- cCGGCgAGCccGCGACGGCGGagggagaggaaggcGGCGGUg-- -3'
miRNA:   3'- -GCCG-UCG--UGUUGCCGCU--------------CCGCCAagu -5'
24930 5' -58 NC_005284.1 + 11330 0.7 0.319169
Target:  5'- cCGGCAGCGgAucgcgcaacugcGCGuCGAGGCGGUcgCAa -3'
miRNA:   3'- -GCCGUCGUgU------------UGCcGCUCCGCCAa-GU- -5'
24930 5' -58 NC_005284.1 + 37805 0.7 0.342942
Target:  5'- uCGGauaAGCGCGGCcuuucGGCGGGGCGGc--- -3'
miRNA:   3'- -GCCg--UCGUGUUG-----CCGCUCCGCCaagu -5'
24930 5' -58 NC_005284.1 + 50300 0.7 0.351145
Target:  5'- aGGCuGCugAACGGCGAauGCGGcuUUCGu -3'
miRNA:   3'- gCCGuCGugUUGCCGCUc-CGCC--AAGU- -5'
24930 5' -58 NC_005284.1 + 19027 0.69 0.38533
Target:  5'- aGGCGGCGaucgcCGAgGGCGAuauGGCGGUcgCGa -3'
miRNA:   3'- gCCGUCGU-----GUUgCCGCU---CCGCCAa-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.