Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24930 | 5' | -58 | NC_005284.1 | + | 49107 | 0.67 | 0.479773 |
Target: 5'- uCGaGCAGCGCGAgGGCGAaGU-GUUCAu -3' miRNA: 3'- -GC-CGUCGUGUUgCCGCUcCGcCAAGU- -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 3416 | 0.71 | 0.311524 |
Target: 5'- gGGUGGCaauGCAGCGGUGuuGaCGGUUCAg -3' miRNA: 3'- gCCGUCG---UGUUGCCGCucC-GCCAAGU- -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 8445 | 0.7 | 0.316861 |
Target: 5'- cCGGCgAGCccGCGACGGCGGagggagaggaaggcGGCGGUg-- -3' miRNA: 3'- -GCCG-UCG--UGUUGCCGCU--------------CCGCCAagu -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 11330 | 0.7 | 0.319169 |
Target: 5'- cCGGCAGCGgAucgcgcaacugcGCGuCGAGGCGGUcgCAa -3' miRNA: 3'- -GCCGUCGUgU------------UGCcGCUCCGCCAa-GU- -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 19027 | 0.69 | 0.38533 |
Target: 5'- aGGCGGCGaucgcCGAgGGCGAuauGGCGGUcgCGa -3' miRNA: 3'- gCCGUCGU-----GUUgCCGCU---CCGCCAa-GU- -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 45715 | 0.69 | 0.40687 |
Target: 5'- aCGGCuGUACAucuucGCGGCcagaaacuucucuggGAGGCGGUg-- -3' miRNA: 3'- -GCCGuCGUGU-----UGCCG---------------CUCCGCCAagu -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 19637 | 0.68 | 0.43104 |
Target: 5'- gCGGguGUACGACGGCaacGGCGuGcUUCGc -3' miRNA: 3'- -GCCguCGUGUUGCCGcu-CCGC-C-AAGU- -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 32533 | 0.68 | 0.4396 |
Target: 5'- aGGCucGCcacccucGCGGCgGGCGGGGCGGUg-- -3' miRNA: 3'- gCCGu-CG-------UGUUG-CCGCUCCGCCAagu -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 8643 | 0.68 | 0.450193 |
Target: 5'- gCGGU-GCGCGACGGCGGGcgcacaGCGGa--- -3' miRNA: 3'- -GCCGuCGUGUUGCCGCUC------CGCCaagu -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 30422 | 0.71 | 0.289429 |
Target: 5'- -cGCGuGCGCGACGGCGAGGUGcuGUUUc -3' miRNA: 3'- gcCGU-CGUGUUGCCGCUCCGC--CAAGu -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 19797 | 0.71 | 0.282342 |
Target: 5'- aCGGCAGCGCGGCGGCaGAucucucGcGCGGg--- -3' miRNA: 3'- -GCCGUCGUGUUGCCG-CU------C-CGCCaagu -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 12183 | 0.71 | 0.275394 |
Target: 5'- aCGGCuuucaucuCGCGACgGGCGGGGCGGUg-- -3' miRNA: 3'- -GCCGuc------GUGUUG-CCGCUCCGCCAagu -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 13359 | 0.77 | 0.111528 |
Target: 5'- uCGGCGGCAagcugacggugGGCGGCGAucugucugcGGCGGUUCAa -3' miRNA: 3'- -GCCGUCGUg----------UUGCCGCU---------CCGCCAAGU- -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 11259 | 0.75 | 0.168064 |
Target: 5'- gCGGCAGCgGCucgcGCGGCGAaggggGGCGGUguUCAu -3' miRNA: 3'- -GCCGUCG-UGu---UGCCGCU-----CCGCCA--AGU- -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 3238 | 0.75 | 0.172169 |
Target: 5'- aGGCAGCGCGACGGUcccugcuGAGGcCGGg--- -3' miRNA: 3'- gCCGUCGUGUUGCCG-------CUCC-GCCaagu -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 45652 | 0.73 | 0.207789 |
Target: 5'- uGGCGGCucguCggUGcGCGAGGCGGUg-- -3' miRNA: 3'- gCCGUCGu---GuuGC-CGCUCCGCCAagu -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 409 | 0.73 | 0.21329 |
Target: 5'- gCGGCGGCGCaAAUGGCGAGuuuCGGcgCAa -3' miRNA: 3'- -GCCGUCGUG-UUGCCGCUCc--GCCaaGU- -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 12410 | 0.72 | 0.236554 |
Target: 5'- cCGGC-GCGCAACGGCGGGaucuCGG-UCAg -3' miRNA: 3'- -GCCGuCGUGUUGCCGCUCc---GCCaAGU- -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 38591 | 0.72 | 0.261908 |
Target: 5'- uCGGCcgAGCGCAcGCGGCGAGuaGG-UCAu -3' miRNA: 3'- -GCCG--UCGUGU-UGCCGCUCcgCCaAGU- -5' |
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24930 | 5' | -58 | NC_005284.1 | + | 21806 | 0.71 | 0.275394 |
Target: 5'- aCGGCAGCcggugGCGACGGCGugcccGGCGcUUCc -3' miRNA: 3'- -GCCGUCG-----UGUUGCCGCu----CCGCcAAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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