miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24931 3' -55.7 NC_005284.1 + 21528 1.1 0.00073
Target:  5'- gCGUCGAGCACCUGAUCGGCGCACAUCg -3'
miRNA:   3'- -GCAGCUCGUGGACUAGCCGCGUGUAG- -5'
24931 3' -55.7 NC_005284.1 + 16567 0.77 0.176979
Target:  5'- aCGUCGAGCACCU--UCGcGCGUGCAaUCg -3'
miRNA:   3'- -GCAGCUCGUGGAcuAGC-CGCGUGU-AG- -5'
24931 3' -55.7 NC_005284.1 + 460 0.75 0.22497
Target:  5'- aGcCGgcAGCGCCUGGUCGGCGCAa--- -3'
miRNA:   3'- gCaGC--UCGUGGACUAGCCGCGUguag -5'
24931 3' -55.7 NC_005284.1 + 22930 0.75 0.243268
Target:  5'- aGUCGGGCuguUCUGAUCGauuggcGCGCGCGUUg -3'
miRNA:   3'- gCAGCUCGu--GGACUAGC------CGCGUGUAG- -5'
24931 3' -55.7 NC_005284.1 + 18563 0.73 0.321032
Target:  5'- aCGcCGAGCGCgUucUCGGCGCGCAc- -3'
miRNA:   3'- -GCaGCUCGUGgAcuAGCCGCGUGUag -5'
24931 3' -55.7 NC_005284.1 + 8976 0.73 0.321032
Target:  5'- gCGUCGAGCgguuGCCgUGGUCGcGCGCgaugcgcagcACGUCg -3'
miRNA:   3'- -GCAGCUCG----UGG-ACUAGC-CGCG----------UGUAG- -5'
24931 3' -55.7 NC_005284.1 + 16675 0.72 0.345237
Target:  5'- cCGUCGAGCgugagGCCggcGUCGGCGUGCcgCu -3'
miRNA:   3'- -GCAGCUCG-----UGGac-UAGCCGCGUGuaG- -5'
24931 3' -55.7 NC_005284.1 + 31514 0.72 0.362087
Target:  5'- --cCGGcGCGCCgcagCGGCGCACGUCg -3'
miRNA:   3'- gcaGCU-CGUGGacuaGCCGCGUGUAG- -5'
24931 3' -55.7 NC_005284.1 + 17480 0.71 0.415968
Target:  5'- uCGUacugGGGCGCCgGGUCGGUGguCGCGUCg -3'
miRNA:   3'- -GCAg---CUCGUGGaCUAGCCGC--GUGUAG- -5'
24931 3' -55.7 NC_005284.1 + 20476 0.7 0.425415
Target:  5'- aCGUCGAGCACacgGuaaaaCGGCGUcaacGCAUCu -3'
miRNA:   3'- -GCAGCUCGUGga-Cua---GCCGCG----UGUAG- -5'
24931 3' -55.7 NC_005284.1 + 15834 0.7 0.425415
Target:  5'- cCGUCGuGCAgCUG-UCGGCcCACAUUc -3'
miRNA:   3'- -GCAGCuCGUgGACuAGCCGcGUGUAG- -5'
24931 3' -55.7 NC_005284.1 + 47804 0.7 0.454503
Target:  5'- aCGggCGAGCGCUUGG-CGGCGCuGCGa- -3'
miRNA:   3'- -GCa-GCUCGUGGACUaGCCGCG-UGUag -5'
24931 3' -55.7 NC_005284.1 + 10750 0.7 0.464436
Target:  5'- uGUCGAucGCGCCcg--CGGCGCGCAc- -3'
miRNA:   3'- gCAGCU--CGUGGacuaGCCGCGUGUag -5'
24931 3' -55.7 NC_005284.1 + 17916 0.7 0.474481
Target:  5'- aCGgCGAuCACCUGuccCGGCGCACAa- -3'
miRNA:   3'- -GCaGCUcGUGGACua-GCCGCGUGUag -5'
24931 3' -55.7 NC_005284.1 + 15264 0.69 0.515688
Target:  5'- aCG-CGAGCGCgaaCUGGUCGGUcgGCACGg- -3'
miRNA:   3'- -GCaGCUCGUG---GACUAGCCG--CGUGUag -5'
24931 3' -55.7 NC_005284.1 + 1110 0.69 0.525162
Target:  5'- -uUCGAGC-CgCUGAUUGGCaacccgggcgacgGCGCGUCg -3'
miRNA:   3'- gcAGCUCGuG-GACUAGCCG-------------CGUGUAG- -5'
24931 3' -55.7 NC_005284.1 + 10596 0.69 0.530454
Target:  5'- uCGaUCGAGCgcuGCCUGAUCGGcaUccgagaccaccgacgGCGCAUCg -3'
miRNA:   3'- -GC-AGCUCG---UGGACUAGCC--G---------------CGUGUAG- -5'
24931 3' -55.7 NC_005284.1 + 2201 0.68 0.547514
Target:  5'- uGUCGuuGCccuGCUUGAUCgGGCGCaccACAUCg -3'
miRNA:   3'- gCAGCu-CG---UGGACUAG-CCGCG---UGUAG- -5'
24931 3' -55.7 NC_005284.1 + 16015 0.68 0.547514
Target:  5'- -cUCGAGCAUCcGGUCGG-GCGCGa- -3'
miRNA:   3'- gcAGCUCGUGGaCUAGCCgCGUGUag -5'
24931 3' -55.7 NC_005284.1 + 39749 0.68 0.569074
Target:  5'- uGUCGAGCACCUGuu--GCGCGa--- -3'
miRNA:   3'- gCAGCUCGUGGACuagcCGCGUguag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.