Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24931 | 3' | -55.7 | NC_005284.1 | + | 460 | 0.75 | 0.22497 |
Target: 5'- aGcCGgcAGCGCCUGGUCGGCGCAa--- -3' miRNA: 3'- gCaGC--UCGUGGACUAGCCGCGUguag -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 1110 | 0.69 | 0.525162 |
Target: 5'- -uUCGAGC-CgCUGAUUGGCaacccgggcgacgGCGCGUCg -3' miRNA: 3'- gcAGCUCGuG-GACUAGCCG-------------CGUGUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 2201 | 0.68 | 0.547514 |
Target: 5'- uGUCGuuGCccuGCUUGAUCgGGCGCaccACAUCg -3' miRNA: 3'- gCAGCu-CG---UGGACUAG-CCGCG---UGUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 4360 | 0.66 | 0.710987 |
Target: 5'- -uUCGAGCACUUGcUCcgGGUGCGaGUCg -3' miRNA: 3'- gcAGCUCGUGGACuAG--CCGCGUgUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 5466 | 0.66 | 0.656672 |
Target: 5'- aGUCGAGCAagccggcggCUGAUCGGgGUucuGCAa- -3' miRNA: 3'- gCAGCUCGUg--------GACUAGCCgCG---UGUag -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 6613 | 0.66 | 0.710987 |
Target: 5'- uGUCGcGCGCCUGA---GCGCcuuCGUCg -3' miRNA: 3'- gCAGCuCGUGGACUagcCGCGu--GUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 7075 | 0.67 | 0.645698 |
Target: 5'- cCGgCGAGCGCCauGUCGaGCGCGCc-- -3' miRNA: 3'- -GCaGCUCGUGGacUAGC-CGCGUGuag -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 7155 | 0.68 | 0.579935 |
Target: 5'- aGUCG-GCaaGCC-GAUCGGCGUcggugaACGUCg -3' miRNA: 3'- gCAGCuCG--UGGaCUAGCCGCG------UGUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 7448 | 0.68 | 0.590839 |
Target: 5'- uCGaCGAaCGCCaGAUCGGC-CGCGUCg -3' miRNA: 3'- -GCaGCUcGUGGaCUAGCCGcGUGUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 8761 | 0.66 | 0.700234 |
Target: 5'- cCGcCGcAGCGgCgu-UCGGCGUGCAUCa -3' miRNA: 3'- -GCaGC-UCGUgGacuAGCCGCGUGUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 8976 | 0.73 | 0.321032 |
Target: 5'- gCGUCGAGCgguuGCCgUGGUCGcGCGCgaugcgcagcACGUCg -3' miRNA: 3'- -GCAGCUCG----UGG-ACUAGC-CGCG----------UGUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 9807 | 0.66 | 0.678541 |
Target: 5'- aCGUCGccGGCAgUcagGAaaUCGGCGCgcGCAUCa -3' miRNA: 3'- -GCAGC--UCGUgGa--CU--AGCCGCG--UGUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 10583 | 0.67 | 0.612742 |
Target: 5'- gCGUCGAcgagaaaucGCGCgaGAUCGgGCGaCugAUCg -3' miRNA: 3'- -GCAGCU---------CGUGgaCUAGC-CGC-GugUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 10596 | 0.69 | 0.530454 |
Target: 5'- uCGaUCGAGCgcuGCCUGAUCGGcaUccgagaccaccgacgGCGCAUCg -3' miRNA: 3'- -GC-AGCUCG---UGGACUAGCC--G---------------CGUGUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 10750 | 0.7 | 0.464436 |
Target: 5'- uGUCGAucGCGCCcg--CGGCGCGCAc- -3' miRNA: 3'- gCAGCU--CGUGGacuaGCCGCGUGUag -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 13137 | 0.66 | 0.710987 |
Target: 5'- uCGUUGAGaCACCUGAgaUCGaGCGga-GUCg -3' miRNA: 3'- -GCAGCUC-GUGGACU--AGC-CGCgugUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 15264 | 0.69 | 0.515688 |
Target: 5'- aCG-CGAGCGCgaaCUGGUCGGUcgGCACGg- -3' miRNA: 3'- -GCaGCUCGUG---GACUAGCCG--CGUGUag -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 15834 | 0.7 | 0.425415 |
Target: 5'- cCGUCGuGCAgCUG-UCGGCcCACAUUc -3' miRNA: 3'- -GCAGCuCGUgGACuAGCCGcGUGUAG- -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 15933 | 0.66 | 0.700234 |
Target: 5'- -uUCcGGCGuuCCUGAcgUCGGCGCGCGa- -3' miRNA: 3'- gcAGcUCGU--GGACU--AGCCGCGUGUag -5' |
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24931 | 3' | -55.7 | NC_005284.1 | + | 16015 | 0.68 | 0.547514 |
Target: 5'- -cUCGAGCAUCcGGUCGG-GCGCGa- -3' miRNA: 3'- gcAGCUCGUGGaCUAGCCgCGUGUag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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