Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24932 | 3' | -57.8 | NC_005284.1 | + | 2622 | 0.66 | 0.599473 |
Target: 5'- cGCGAGaAAGCuccGGuCGGCgGGUGUGCu -3' miRNA: 3'- -UGCUC-UUUGuc-CC-GCUGgCCGCACGc -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 6815 | 0.68 | 0.445387 |
Target: 5'- gGCGAGGccGAgGGGGCGAUucgcaccgaguUGGCGcGCGc -3' miRNA: 3'- -UGCUCU--UUgUCCCGCUG-----------GCCGCaCGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 7037 | 0.66 | 0.556808 |
Target: 5'- cACGAcGAAAUAcGGCG-CCGGCGccuucuccggUGCGa -3' miRNA: 3'- -UGCU-CUUUGUcCCGCuGGCCGC----------ACGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 8744 | 0.66 | 0.593034 |
Target: 5'- cCGcGAAuacgcacaagccgccGCAGcGGCGuuCGGCGUGCa -3' miRNA: 3'- uGCuCUU---------------UGUC-CCGCugGCCGCACGc -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 10070 | 0.66 | 0.599473 |
Target: 5'- aGCGAGcgGAACGcGcGGCGACCGcgaccGCG-GCGg -3' miRNA: 3'- -UGCUC--UUUGU-C-CCGCUGGC-----CGCaCGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 10660 | 0.66 | 0.578055 |
Target: 5'- cGCGAGGAACuGGuGCGcGCCGcGgGcGCGa -3' miRNA: 3'- -UGCUCUUUGuCC-CGC-UGGC-CgCaCGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 12391 | 0.68 | 0.484599 |
Target: 5'- cGCGGGAGGaGGGGauucGCCGGCGcGCa -3' miRNA: 3'- -UGCUCUUUgUCCCgc--UGGCCGCaCGc -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 12906 | 0.66 | 0.599473 |
Target: 5'- gACGaAGAGuccGCGGGcGCGAagCGGCG-GCGu -3' miRNA: 3'- -UGC-UCUU---UGUCC-CGCUg-GCCGCaCGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 14044 | 0.72 | 0.259479 |
Target: 5'- cCG-GAAGCGGGGCGgcagGCUGGCGUcaucGCGa -3' miRNA: 3'- uGCuCUUUGUCCCGC----UGGCCGCA----CGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 16291 | 0.66 | 0.556808 |
Target: 5'- aGCGcuGcGCAGGGCGAgCCGGUGccGCu -3' miRNA: 3'- -UGCucUuUGUCCCGCU-GGCCGCa-CGc -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 16681 | 0.68 | 0.464777 |
Target: 5'- aGCGuGAGGCc-GGCG-UCGGCGUGCc -3' miRNA: 3'- -UGCuCUUUGucCCGCuGGCCGCACGc -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 18977 | 0.66 | 0.606998 |
Target: 5'- aACGAucuACGcGGGCGacgaaaggcucaauGCUGGCGUGUGg -3' miRNA: 3'- -UGCUcuuUGU-CCCGC--------------UGGCCGCACGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 19015 | 0.66 | 0.556808 |
Target: 5'- gGCGGGGugauUAGGuCGAUCGGCGcGCGc -3' miRNA: 3'- -UGCUCUuu--GUCCcGCUGGCCGCaCGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 19401 | 0.73 | 0.253026 |
Target: 5'- gACGAGGGcgguGCAGGcGUGAUCGGCGcGCc -3' miRNA: 3'- -UGCUCUU----UGUCC-CGCUGGCCGCaCGc -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 21308 | 0.73 | 0.222722 |
Target: 5'- aACGGcGAGGCGguucaaugcGGGCGACUGGCGggGCGc -3' miRNA: 3'- -UGCU-CUUUGU---------CCCGCUGGCCGCa-CGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 21499 | 0.68 | 0.474636 |
Target: 5'- cGCGcugcuuGGCAuGGCGGCCGGCGcuUGCGu -3' miRNA: 3'- -UGCucu---UUGUcCCGCUGGCCGC--ACGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 22013 | 1.08 | 0.00076 |
Target: 5'- aACGAGAAACAGGGCGACCGGCGUGCGu -3' miRNA: 3'- -UGCUCUUUGUCCCGCUGGCCGCACGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 22133 | 0.66 | 0.556808 |
Target: 5'- cACGG---ACAGuggaaaGGCGACCGGCaUGCGu -3' miRNA: 3'- -UGCUcuuUGUC------CCGCUGGCCGcACGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 26552 | 0.66 | 0.610227 |
Target: 5'- uUGGGcGGGCAGuaGGUGGCCGGCGagagugGCGu -3' miRNA: 3'- uGCUC-UUUGUC--CCGCUGGCCGCa-----CGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 29467 | 0.67 | 0.51506 |
Target: 5'- gACGAcGAAACaAGGcuugucgaGCGACUGGCGgaagaGCGg -3' miRNA: 3'- -UGCU-CUUUG-UCC--------CGCUGGCCGCa----CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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