miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24944 3' -54.8 NC_005284.1 + 22027 0.66 0.737127
Target:  5'- ---cGACCGgCGUGCgUGCgGGAAc-- -3'
miRNA:   3'- uuaaCUGGCgGCACG-GCGgCCUUuuc -5'
24944 3' -54.8 NC_005284.1 + 12485 0.66 0.726425
Target:  5'- ---aGAucCCGCCGuUGCgCGCCGGcGAAu -3'
miRNA:   3'- uuaaCU--GGCGGC-ACG-GCGGCCuUUUc -5'
24944 3' -54.8 NC_005284.1 + 49885 0.66 0.715625
Target:  5'- ---gGAagGCCG-GCCGCCGGGGc-- -3'
miRNA:   3'- uuaaCUggCGGCaCGGCGGCCUUuuc -5'
24944 3' -54.8 NC_005284.1 + 49516 0.66 0.715625
Target:  5'- --gUGGCCgGUCGagGUCGCCGGAu--- -3'
miRNA:   3'- uuaACUGG-CGGCa-CGGCGGCCUuuuc -5'
24944 3' -54.8 NC_005284.1 + 41076 0.66 0.704741
Target:  5'- ---cGAUCGCCGUuccaGCaauGCCGGggGGa -3'
miRNA:   3'- uuaaCUGGCGGCA----CGg--CGGCCuuUUc -5'
24944 3' -54.8 NC_005284.1 + 10945 0.67 0.63831
Target:  5'- --aUGGCCgGCCucGUCGCCGGAcGAGc -3'
miRNA:   3'- uuaACUGG-CGGcaCGGCGGCCUuUUC- -5'
24944 3' -54.8 NC_005284.1 + 10261 0.67 0.627155
Target:  5'- ---cGACCGCCGccaGCaaGCCGGAAc-- -3'
miRNA:   3'- uuaaCUGGCGGCa--CGg-CGGCCUUuuc -5'
24944 3' -54.8 NC_005284.1 + 21390 0.68 0.560655
Target:  5'- --gUGACUGCUggcggucgaGUGCUGCCGGGu--- -3'
miRNA:   3'- uuaACUGGCGG---------CACGGCGGCCUuuuc -5'
24944 3' -54.8 NC_005284.1 + 21869 0.69 0.549728
Target:  5'- ---cGGCUGCCGUGCaguGUCGGAc--- -3'
miRNA:   3'- uuaaCUGGCGGCACGg--CGGCCUuuuc -5'
24944 3' -54.8 NC_005284.1 + 14736 0.69 0.528082
Target:  5'- ---gGuCCGCCGUcggauuGCCgGCCGGAAAAu -3'
miRNA:   3'- uuaaCuGGCGGCA------CGG-CGGCCUUUUc -5'
24944 3' -54.8 NC_005284.1 + 43826 0.7 0.496237
Target:  5'- ---gGACCGCCGUGC-GCCGaucGAAGc -3'
miRNA:   3'- uuaaCUGGCGGCACGgCGGCcu-UUUC- -5'
24944 3' -54.8 NC_005284.1 + 17866 0.7 0.455195
Target:  5'- ---cGACCcaaagaagGCCG-GCCGCCGGAucGGc -3'
miRNA:   3'- uuaaCUGG--------CGGCaCGGCGGCCUuuUC- -5'
24944 3' -54.8 NC_005284.1 + 31466 1.06 0.001743
Target:  5'- cAAUUGACCGCCGUGCCGCCGGAAAAGc -3'
miRNA:   3'- -UUAACUGGCGGCACGGCGGCCUUUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.