Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24949 | 5' | -51 | NC_005284.1 | + | 35361 | 1.08 | 0.003057 |
Target: 5'- aUGAAUGCCGAUUCGAUGCCGAACGCUu -3' miRNA: 3'- -ACUUACGGCUAAGCUACGGCUUGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 27829 | 0.79 | 0.278669 |
Target: 5'- ----gGCCGAUUCGAUGCCaGACGUUu -3' miRNA: 3'- acuuaCGGCUAAGCUACGGcUUGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 43521 | 0.79 | 0.278669 |
Target: 5'- cGGcUGCUguGAUUCGAUGCCGAuaGCGCg -3' miRNA: 3'- aCUuACGG--CUAAGCUACGGCU--UGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 35408 | 0.75 | 0.424557 |
Target: 5'- gGAAU-CCGAcgUCGAUGCCGAAaGCUa -3' miRNA: 3'- aCUUAcGGCUa-AGCUACGGCUUgCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 38581 | 0.75 | 0.454656 |
Target: 5'- aGAcgGCCG-UUCG--GCCGAGCGCa -3' miRNA: 3'- aCUuaCGGCuAAGCuaCGGCUUGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 18057 | 0.74 | 0.475352 |
Target: 5'- ----cGCCGAUcCGGUGgCGGGCGCUg -3' miRNA: 3'- acuuaCGGCUAaGCUACgGCUUGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 30451 | 0.73 | 0.518075 |
Target: 5'- cGAGUcGCCGAUUCGugugcUGCCGGccgGCGUg -3' miRNA: 3'- aCUUA-CGGCUAAGCu----ACGGCU---UGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 49519 | 0.73 | 0.518075 |
Target: 5'- aGAGUgGCCGG-UCGAggucGCCGGAUGCg -3' miRNA: 3'- aCUUA-CGGCUaAGCUa---CGGCUUGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 21166 | 0.72 | 0.618725 |
Target: 5'- uUGcAUGCCGugaCGAUGCCGAuuggaucuggccGCGCg -3' miRNA: 3'- -ACuUACGGCuaaGCUACGGCU------------UGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 40265 | 0.71 | 0.630099 |
Target: 5'- aUGAAaGCUGAgu-GGUGUCGGGCGCUa -3' miRNA: 3'- -ACUUaCGGCUaagCUACGGCUUGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 12788 | 0.71 | 0.661922 |
Target: 5'- uUGAAUGUCGAUUCGcgauuauucagGCCGucCGCg -3' miRNA: 3'- -ACUUACGGCUAAGCua---------CGGCuuGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 30469 | 0.7 | 0.709136 |
Target: 5'- cGAcAUGCCGAccagcacacgCGG-GCCGAGCGCa -3' miRNA: 3'- aCU-UACGGCUaa--------GCUaCGGCUUGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 3815 | 0.7 | 0.730082 |
Target: 5'- gGGAUGgCGAUcuguggaUCGAcgaagcGCCGAACGCa -3' miRNA: 3'- aCUUACgGCUA-------AGCUa-----CGGCUUGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 12247 | 0.69 | 0.763406 |
Target: 5'- aUGAAaGCCGuaggcGUUCGA-GCCGAcagccGCGCUu -3' miRNA: 3'- -ACUUaCGGC-----UAAGCUaCGGCU-----UGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 936 | 0.68 | 0.814083 |
Target: 5'- --cGUGCUGGacgacgagUUCGGUGCCGAgguguacgccgGCGCg -3' miRNA: 3'- acuUACGGCU--------AAGCUACGGCU-----------UGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 45093 | 0.68 | 0.842136 |
Target: 5'- gUGAAguUGCCGAgcgccgUUGAcUGCUGcGACGCUg -3' miRNA: 3'- -ACUU--ACGGCUa-----AGCU-ACGGC-UUGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 34007 | 0.67 | 0.859677 |
Target: 5'- cGAggGCCGAUucugcgcguUCGAggcgGUCGAggaGCGCa -3' miRNA: 3'- aCUuaCGGCUA---------AGCUa---CGGCU---UGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 52970 | 0.67 | 0.859677 |
Target: 5'- ---cUGCCGAUgcuUCGAguUGCCGAGgcaauCGCg -3' miRNA: 3'- acuuACGGCUA---AGCU--ACGGCUU-----GCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 8656 | 0.67 | 0.875401 |
Target: 5'- cGGcgGUCGuAUUCGGUcguauucGCCGuAACGCUg -3' miRNA: 3'- aCUuaCGGC-UAAGCUA-------CGGC-UUGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 50947 | 0.67 | 0.884065 |
Target: 5'- cGAAUGCCuAUUgCGAUGCaCGuAUGCc -3' miRNA: 3'- aCUUACGGcUAA-GCUACG-GCuUGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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