Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24949 | 5' | -51 | NC_005284.1 | + | 35361 | 1.08 | 0.003057 |
Target: 5'- aUGAAUGCCGAUUCGAUGCCGAACGCUu -3' miRNA: 3'- -ACUUACGGCUAAGCUACGGCUUGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 13268 | 0.66 | 0.917242 |
Target: 5'- cUGAAUGCCGg--CGAcugggugaaguacgUGUCGGACGgUg -3' miRNA: 3'- -ACUUACGGCuaaGCU--------------ACGGCUUGCgA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 17295 | 0.66 | 0.89824 |
Target: 5'- gUGAccGUGUCGAUgcuUCGAUGgUCGAuaaguggGCGCUg -3' miRNA: 3'- -ACU--UACGGCUA---AGCUAC-GGCU-------UGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 21157 | 0.66 | 0.891652 |
Target: 5'- aUGAAUGCCGcg-CGcgGCuCGAGCa-- -3' miRNA: 3'- -ACUUACGGCuaaGCuaCG-GCUUGcga -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 52970 | 0.67 | 0.859677 |
Target: 5'- ---cUGCCGAUgcuUCGAguUGCCGAGgcaauCGCg -3' miRNA: 3'- acuuACGGCUA---AGCU--ACGGCUU-----GCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 34007 | 0.67 | 0.859677 |
Target: 5'- cGAggGCCGAUucugcgcguUCGAggcgGUCGAggaGCGCa -3' miRNA: 3'- aCUuaCGGCUA---------AGCUa---CGGCU---UGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 45093 | 0.68 | 0.842136 |
Target: 5'- gUGAAguUGCCGAgcgccgUUGAcUGCUGcGACGCUg -3' miRNA: 3'- -ACUU--ACGGCUa-----AGCU-ACGGC-UUGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 936 | 0.68 | 0.814083 |
Target: 5'- --cGUGCUGGacgacgagUUCGGUGCCGAgguguacgccgGCGCg -3' miRNA: 3'- acuUACGGCU--------AAGCUACGGCU-----------UGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 3815 | 0.7 | 0.730082 |
Target: 5'- gGGAUGgCGAUcuguggaUCGAcgaagcGCCGAACGCa -3' miRNA: 3'- aCUUACgGCUA-------AGCUa-----CGGCUUGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 40265 | 0.71 | 0.630099 |
Target: 5'- aUGAAaGCUGAgu-GGUGUCGGGCGCUa -3' miRNA: 3'- -ACUUaCGGCUaagCUACGGCUUGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 30451 | 0.73 | 0.518075 |
Target: 5'- cGAGUcGCCGAUUCGugugcUGCCGGccgGCGUg -3' miRNA: 3'- aCUUA-CGGCUAAGCu----ACGGCU---UGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 18057 | 0.74 | 0.475352 |
Target: 5'- ----cGCCGAUcCGGUGgCGGGCGCUg -3' miRNA: 3'- acuuaCGGCUAaGCUACgGCUUGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 38581 | 0.75 | 0.454656 |
Target: 5'- aGAcgGCCG-UUCG--GCCGAGCGCa -3' miRNA: 3'- aCUuaCGGCuAAGCuaCGGCUUGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 43521 | 0.79 | 0.278669 |
Target: 5'- cGGcUGCUguGAUUCGAUGCCGAuaGCGCg -3' miRNA: 3'- aCUuACGG--CUAAGCUACGGCU--UGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 8656 | 0.67 | 0.875401 |
Target: 5'- cGGcgGUCGuAUUCGGUcguauucGCCGuAACGCUg -3' miRNA: 3'- aCUuaCGGC-UAAGCUA-------CGGC-UUGCGA- -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 50947 | 0.67 | 0.884065 |
Target: 5'- cGAAUGCCuAUUgCGAUGCaCGuAUGCc -3' miRNA: 3'- aCUUACGGcUAA-GCUACG-GCuUGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 18579 | 0.66 | 0.912705 |
Target: 5'- ----cGCCGGaaUCGAcgucacGCCGAGCGCg -3' miRNA: 3'- acuuaCGGCUa-AGCUa-----CGGCUUGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 15438 | 0.66 | 0.913362 |
Target: 5'- -cGAUGCCGA-UCGAgccaucggccugcacGCCGAGCGaCa -3' miRNA: 3'- acUUACGGCUaAGCUa--------------CGGCUUGC-Ga -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 42861 | 0.66 | 0.919142 |
Target: 5'- aGAAUGCCGGcgCGAgguUGuuGuGCGUg -3' miRNA: 3'- aCUUACGGCUaaGCU---ACggCuUGCGa -5' |
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24949 | 5' | -51 | NC_005284.1 | + | 27829 | 0.79 | 0.278669 |
Target: 5'- ----gGCCGAUUCGAUGCCaGACGUUu -3' miRNA: 3'- acuuaCGGCUAAGCUACGGcUUGCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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