miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24951 3' -62.7 NC_005284.1 + 40176 0.66 0.314134
Target:  5'- gAACCGCCACgugCGUCGcgaccaacuccGGCGUCCucugGCUCc -3'
miRNA:   3'- -UUGGCGGUG---GCGGC-----------UCGCAGG----CGAGa -5'
24951 3' -62.7 NC_005284.1 + 37077 0.66 0.314134
Target:  5'- cGACCGCCAUcgacgCGCCGgcgagauucagGGCGUCgCGCa-- -3'
miRNA:   3'- -UUGGCGGUG-----GCGGC-----------UCGCAG-GCGaga -5'
24951 3' -62.7 NC_005284.1 + 14582 0.66 0.32163
Target:  5'- uGGCUGCUGCgCGUCGGaUGUCUGCUCg -3'
miRNA:   3'- -UUGGCGGUG-GCGGCUcGCAGGCGAGa -5'
24951 3' -62.7 NC_005284.1 + 48260 0.66 0.337022
Target:  5'- gAGCUGUCACCGCaaCGGGCGUCacuuCGC-Ca -3'
miRNA:   3'- -UUGGCGGUGGCG--GCUCGCAG----GCGaGa -5'
24951 3' -62.7 NC_005284.1 + 15916 0.66 0.344917
Target:  5'- -uCCGaaaCGCaCGCCGAGCGUgCCGUa-- -3'
miRNA:   3'- uuGGCg--GUG-GCGGCUCGCA-GGCGaga -5'
24951 3' -62.7 NC_005284.1 + 13682 0.66 0.352943
Target:  5'- cGACCGUCGCC-CCGAGCuGgccagCCGUcuUCUu -3'
miRNA:   3'- -UUGGCGGUGGcGGCUCG-Ca----GGCG--AGA- -5'
24951 3' -62.7 NC_005284.1 + 9565 0.66 0.352943
Target:  5'- cGCUGUCGCCGCCu-GCGUcgCCGCg-- -3'
miRNA:   3'- uUGGCGGUGGCGGcuCGCA--GGCGaga -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.