miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24952 3' -59.1 NC_005284.1 + 17956 0.65 0.543231
Target:  5'- cGCCGGCGAcgcuucacggcGAUucugccgUCGGguauugcccaGGCG-CGCGCAg -3'
miRNA:   3'- -CGGCCGCU-----------CUA-------AGUC----------CCGCaGCGCGU- -5'
24952 3' -59.1 NC_005284.1 + 9872 0.66 0.533883
Target:  5'- uGCCGGCGAcGUU---GGCG-CGCGCc -3'
miRNA:   3'- -CGGCCGCUcUAAgucCCGCaGCGCGu -5'
24952 3' -59.1 NC_005284.1 + 3322 0.66 0.533883
Target:  5'- cCCGGCcucag-CAGGGacCGUCGCGCu -3'
miRNA:   3'- cGGCCGcucuaaGUCCC--GCAGCGCGu -5'
24952 3' -59.1 NC_005284.1 + 4866 0.66 0.527682
Target:  5'- aGCCGGUucGcacgaucgcacaucuGUUCAaGGCGUCGCGUc -3'
miRNA:   3'- -CGGCCGcuC---------------UAAGUcCCGCAGCGCGu -5'
24952 3' -59.1 NC_005284.1 + 32751 0.66 0.513321
Target:  5'- uGCC-GCGAucaGUUCAGGauCGUCGCGCu -3'
miRNA:   3'- -CGGcCGCUc--UAAGUCCc-GCAGCGCGu -5'
24952 3' -59.1 NC_005284.1 + 16780 0.66 0.513321
Target:  5'- uGCCGGCGcuacAGcgUCAGGacaCGUCGaacgGCAa -3'
miRNA:   3'- -CGGCCGC----UCuaAGUCCc--GCAGCg---CGU- -5'
24952 3' -59.1 NC_005284.1 + 31970 0.66 0.503162
Target:  5'- gGUCGGCGAaugUCAGGuGaucaGcCGCGCAg -3'
miRNA:   3'- -CGGCCGCUcuaAGUCC-Cg---CaGCGCGU- -5'
24952 3' -59.1 NC_005284.1 + 17878 0.66 0.503162
Target:  5'- gGCCGGCcgccGGA-UCGgcGGGCGcaucCGCGCAg -3'
miRNA:   3'- -CGGCCGc---UCUaAGU--CCCGCa---GCGCGU- -5'
24952 3' -59.1 NC_005284.1 + 43558 0.67 0.473235
Target:  5'- uCCGGaCGGGuuucgcccgUCAGGGUgcguaGUCGUGCGa -3'
miRNA:   3'- cGGCC-GCUCua-------AGUCCCG-----CAGCGCGU- -5'
24952 3' -59.1 NC_005284.1 + 18894 0.67 0.473235
Target:  5'- cGCCGGCcAGA-UCGGGaaGUCgGCGCu -3'
miRNA:   3'- -CGGCCGcUCUaAGUCCcgCAG-CGCGu -5'
24952 3' -59.1 NC_005284.1 + 47996 0.67 0.463459
Target:  5'- cGCCauuGCGGaAUUCGcGGGCGUgaCGCGCGu -3'
miRNA:   3'- -CGGc--CGCUcUAAGU-CCCGCA--GCGCGU- -5'
24952 3' -59.1 NC_005284.1 + 4351 0.67 0.45379
Target:  5'- cGCCGGCGAGAa----GGCGcUCGCugaaGCAa -3'
miRNA:   3'- -CGGCCGCUCUaagucCCGC-AGCG----CGU- -5'
24952 3' -59.1 NC_005284.1 + 16034 0.67 0.444231
Target:  5'- -aCGGCGAacguGAggCc-GGCGUCGCGCGc -3'
miRNA:   3'- cgGCCGCU----CUaaGucCCGCAGCGCGU- -5'
24952 3' -59.1 NC_005284.1 + 42277 0.67 0.444231
Target:  5'- cGCCGGUcgucGAGGUcgUCAGGaGCuuuUCGCGUg -3'
miRNA:   3'- -CGGCCG----CUCUA--AGUCC-CGc--AGCGCGu -5'
24952 3' -59.1 NC_005284.1 + 54443 0.67 0.433848
Target:  5'- cCCGGUGcuugcacGGcUUCAucGGGCGUCGUGCc -3'
miRNA:   3'- cGGCCGC-------UCuAAGU--CCCGCAGCGCGu -5'
24952 3' -59.1 NC_005284.1 + 26569 0.68 0.425459
Target:  5'- gGCCGGCGAGAgu---GGCGUuCGC-CAc -3'
miRNA:   3'- -CGGCCGCUCUaagucCCGCA-GCGcGU- -5'
24952 3' -59.1 NC_005284.1 + 19018 0.68 0.39732
Target:  5'- aUCGGCGGGGUgaUUAGgucgaucGGCG-CGCGCAg -3'
miRNA:   3'- cGGCCGCUCUA--AGUC-------CCGCaGCGCGU- -5'
24952 3' -59.1 NC_005284.1 + 14721 0.68 0.380675
Target:  5'- uGCCGGCcGGAaaaUUCAcGGCGUcgagguagCGCGCGa -3'
miRNA:   3'- -CGGCCGcUCU---AAGUcCCGCA--------GCGCGU- -5'
24952 3' -59.1 NC_005284.1 + 10126 0.69 0.363664
Target:  5'- aGCgCGGCGAcGGcgCAGacGGCGcUCGCGCGu -3'
miRNA:   3'- -CG-GCCGCU-CUaaGUC--CCGC-AGCGCGU- -5'
24952 3' -59.1 NC_005284.1 + 195 0.71 0.247033
Target:  5'- uGUCGGCGAGGcgCGGGGCauGUgggaGCGCGu -3'
miRNA:   3'- -CGGCCGCUCUaaGUCCCG--CAg---CGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.