miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24957 3' -65.4 NC_005284.1 + 47066 0.68 0.220931
Target:  5'- cGCCGCCgGCGgcggcacgagcuucGGCGCacCGCUcaCGCGCa -3'
miRNA:   3'- -CGGCGG-CGCa-------------CCGCGcaGCGG--GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 48127 0.68 0.218784
Target:  5'- gGCCGUCGCcaaacccGGCGCGUCuuucuGCCgaaGUGCu -3'
miRNA:   3'- -CGGCGGCGca-----CCGCGCAG-----CGGg--CGCG- -5'
24957 3' -65.4 NC_005284.1 + 44874 0.68 0.218784
Target:  5'- cGCUGCUGCGcGaGCGCGagcgaCGCUucggCGCGCu -3'
miRNA:   3'- -CGGCGGCGCaC-CGCGCa----GCGG----GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 53880 0.68 0.21825
Target:  5'- aGCgGCCGgGaugGGCGgcCGUCgucgcuugccuugGCCUGCGCg -3'
miRNA:   3'- -CGgCGGCgCa--CCGC--GCAG-------------CGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 6467 0.68 0.213495
Target:  5'- cGCCGCCGCcuuccGGauaGCGcUCGaacaCCGCGUu -3'
miRNA:   3'- -CGGCGGCGca---CCg--CGC-AGCg---GGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 47515 0.68 0.208317
Target:  5'- cGCCGUCGUGUucGGCGuCGagGUgccgaCCGUGCg -3'
miRNA:   3'- -CGGCGGCGCA--CCGC-GCagCG-----GGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 33259 0.68 0.208317
Target:  5'- cGCCuCCGCaGUGG-GCGaUGCugCCGCGCg -3'
miRNA:   3'- -CGGcGGCG-CACCgCGCaGCG--GGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 26765 0.68 0.203247
Target:  5'- -aCGgUGC-UGGCGCugcaaccauGUCGCCCGCGg -3'
miRNA:   3'- cgGCgGCGcACCGCG---------CAGCGGGCGCg -5'
24957 3' -65.4 NC_005284.1 + 53569 0.68 0.203247
Target:  5'- aGCgGCUGCc-GGCGCG-CGCCCaUGCc -3'
miRNA:   3'- -CGgCGGCGcaCCGCGCaGCGGGcGCG- -5'
24957 3' -65.4 NC_005284.1 + 21844 0.68 0.198284
Target:  5'- cGCCGCCgGCGUGG-GCGaUgGUgCCGcCGCc -3'
miRNA:   3'- -CGGCGG-CGCACCgCGC-AgCG-GGC-GCG- -5'
24957 3' -65.4 NC_005284.1 + 23170 0.68 0.198284
Target:  5'- aUCGUCGC--GGCGCGUucCGCUCGUGUg -3'
miRNA:   3'- cGGCGGCGcaCCGCGCA--GCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 42103 0.68 0.193428
Target:  5'- gGCCGuCCGCGgcccgcugGGUGUagccGUCGCCgaacugggcuuUGCGCa -3'
miRNA:   3'- -CGGC-GGCGCa-------CCGCG----CAGCGG-----------GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 23727 0.68 0.188676
Target:  5'- aGCCGCUGCuugGGuCG-GUUGaCCUGCGCu -3'
miRNA:   3'- -CGGCGGCGca-CC-GCgCAGC-GGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 37782 0.69 0.184027
Target:  5'- cGuuGaUCGCGUcGGCGauCGUCGCCgugUGCGCg -3'
miRNA:   3'- -CggC-GGCGCA-CCGC--GCAGCGG---GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 18563 0.69 0.184027
Target:  5'- cGCCGCCGUc-GGuCGUGUCGCUgacUGCGg -3'
miRNA:   3'- -CGGCGGCGcaCC-GCGCAGCGG---GCGCg -5'
24957 3' -65.4 NC_005284.1 + 46689 0.69 0.183568
Target:  5'- cGCCGCCGCGaccGCGguugcauCGUCGUCCGagaauaGCc -3'
miRNA:   3'- -CGGCGGCGCac-CGC-------GCAGCGGGCg-----CG- -5'
24957 3' -65.4 NC_005284.1 + 12362 0.69 0.182652
Target:  5'- uUCGCCGCGggugGGCucguuggcgggaGCGcgggaggaggggauUCGCCgGCGCg -3'
miRNA:   3'- cGGCGGCGCa---CCG------------CGC--------------AGCGGgCGCG- -5'
24957 3' -65.4 NC_005284.1 + 45883 0.69 0.17948
Target:  5'- gGCUGUCGCGUcGaGCG-GUUGCCgugguCGCGCg -3'
miRNA:   3'- -CGGCGGCGCA-C-CGCgCAGCGG-----GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 9105 0.69 0.17948
Target:  5'- cGCgGUCGUGaaGGCGUGUuccaauuuccacCGCCuCGCGCa -3'
miRNA:   3'- -CGgCGGCGCa-CCGCGCA------------GCGG-GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 44994 0.69 0.176799
Target:  5'- uGCCGgCGaCGuUGGCGCG-CGCCguugcgacgugagcuUGCGCc -3'
miRNA:   3'- -CGGCgGC-GC-ACCGCGCaGCGG---------------GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.