miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24957 3' -65.4 NC_005284.1 + 45555 1.12 0.00008
Target:  5'- uGCCGCCGCGUGGCGCGUCGCCCGCGCa -3'
miRNA:   3'- -CGGCGGCGCACCGCGCAGCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 45196 0.87 0.007494
Target:  5'- cGCCGCCGCGgcaGCGCGaUCGCCCuGCGCu -3'
miRNA:   3'- -CGGCGGCGCac-CGCGC-AGCGGG-CGCG- -5'
24957 3' -65.4 NC_005284.1 + 23354 0.79 0.028817
Target:  5'- gGCgCGCCGCaGcGGCGCacGUCGCCCGCGa -3'
miRNA:   3'- -CG-GCGGCG-CaCCGCG--CAGCGGGCGCg -5'
24957 3' -65.4 NC_005284.1 + 25531 0.79 0.031275
Target:  5'- gGCCGUCGuCGUGcGCGCGUCGCUcuauuuugagCGUGCa -3'
miRNA:   3'- -CGGCGGC-GCAC-CGCGCAGCGG----------GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 1114 0.76 0.053367
Target:  5'- aGCCGCUgauuggcaacccggGCGacGGCGCGUCGCCauCGUGCu -3'
miRNA:   3'- -CGGCGG--------------CGCa-CCGCGCAGCGG--GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 44706 0.75 0.058325
Target:  5'- cCCGCCGCGgucGCG-GUCGCCgCGCGUu -3'
miRNA:   3'- cGGCGGCGCac-CGCgCAGCGG-GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 36304 0.75 0.061544
Target:  5'- cGCCGagCGCGUucucGGCGCG-CaCCCGCGCg -3'
miRNA:   3'- -CGGCg-GCGCA----CCGCGCaGcGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 33208 0.75 0.064934
Target:  5'- gGCaUGCCGCu--GCGCGUcgaaCGCCCGCGCg -3'
miRNA:   3'- -CG-GCGGCGcacCGCGCA----GCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 32784 0.74 0.07622
Target:  5'- cGCCuCUGCc-GGUGCGUCgGCCUGCGCg -3'
miRNA:   3'- -CGGcGGCGcaCCGCGCAG-CGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 27665 0.73 0.084764
Target:  5'- cGCCGCUauacgggccgGCGUGGCGCGcgggUCGCCgCugccugauuccgGCGCg -3'
miRNA:   3'- -CGGCGG----------CGCACCGCGC----AGCGG-G------------CGCG- -5'
24957 3' -65.4 NC_005284.1 + 4674 0.73 0.087039
Target:  5'- -aCGCCGCGU-GCGCGaUCGC-CGCGUu -3'
miRNA:   3'- cgGCGGCGCAcCGCGC-AGCGgGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 46076 0.72 0.099309
Target:  5'- uGCgCGCCGCGUcGaGCGCG-CGCaCCGUGa -3'
miRNA:   3'- -CG-GCGGCGCA-C-CGCGCaGCG-GGCGCg -5'
24957 3' -65.4 NC_005284.1 + 24712 0.72 0.10466
Target:  5'- uGUCGCCGaagGGCGaaaCGaCGCCCGUGCg -3'
miRNA:   3'- -CGGCGGCgcaCCGC---GCaGCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 21670 0.71 0.116187
Target:  5'- uGCCGCCGCGUcGGCG-GUgGCCgC-CGUc -3'
miRNA:   3'- -CGGCGGCGCA-CCGCgCAgCGG-GcGCG- -5'
24957 3' -65.4 NC_005284.1 + 6984 0.71 0.116187
Target:  5'- cGCgCGCCGCcaaGCGC-UCGCCCGuCGCc -3'
miRNA:   3'- -CG-GCGGCGcacCGCGcAGCGGGC-GCG- -5'
24957 3' -65.4 NC_005284.1 + 33637 0.71 0.117402
Target:  5'- aGCCGCgcgcggcauucaucaCGCGUGaaGCGC-UgGCCCGCGUa -3'
miRNA:   3'- -CGGCG---------------GCGCAC--CGCGcAgCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 44948 0.71 0.122384
Target:  5'- aUCGCCGCGUaGG-GCGU-GCCCGUGa -3'
miRNA:   3'- cGGCGGCGCA-CCgCGCAgCGGGCGCg -5'
24957 3' -65.4 NC_005284.1 + 33506 0.71 0.125597
Target:  5'- uGCUGCCGCaGUaGGCGCG-CGgCCCGaUGUu -3'
miRNA:   3'- -CGGCGGCG-CA-CCGCGCaGC-GGGC-GCG- -5'
24957 3' -65.4 NC_005284.1 + 10673 0.71 0.125597
Target:  5'- uGCgCGCCGCG-GGCGCGaUCGacaCgGCGg -3'
miRNA:   3'- -CG-GCGGCGCaCCGCGC-AGCg--GgCGCg -5'
24957 3' -65.4 NC_005284.1 + 21808 0.71 0.128888
Target:  5'- gGCaGCCG-GUGGCGaCGgcgUGCCCgGCGCu -3'
miRNA:   3'- -CGgCGGCgCACCGC-GCa--GCGGG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.