miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24957 3' -65.4 NC_005284.1 + 23170 0.68 0.198284
Target:  5'- aUCGUCGC--GGCGCGUucCGCUCGUGUg -3'
miRNA:   3'- cGGCGGCGcaCCGCGCA--GCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 49377 0.7 0.150359
Target:  5'- cGCCGagCGCGagcUGGCGCGcCGCaCGgGCa -3'
miRNA:   3'- -CGGCg-GCGC---ACCGCGCaGCGgGCgCG- -5'
24957 3' -65.4 NC_005284.1 + 44895 0.7 0.150359
Target:  5'- cGCCGUCGCucacaacauccgGgcgGGUGCGaaucacUCGCaCCGCGCc -3'
miRNA:   3'- -CGGCGGCG------------Ca--CCGCGC------AGCG-GGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 9903 0.7 0.154239
Target:  5'- aGCgCGCCGaa----GCGUCGCUCGCGCu -3'
miRNA:   3'- -CG-GCGGCgcaccgCGCAGCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 10127 0.69 0.170683
Target:  5'- -gCGCgGCGacGGCGCagacggCGCUCGCGCg -3'
miRNA:   3'- cgGCGgCGCa-CCGCGca----GCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 47689 0.69 0.175032
Target:  5'- uGCCGCUGaCGgcaaggaagGGCacGCG-CGCUCGCGUg -3'
miRNA:   3'- -CGGCGGC-GCa--------CCG--CGCaGCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 12362 0.69 0.182652
Target:  5'- uUCGCCGCGggugGGCucguuggcgggaGCGcgggaggaggggauUCGCCgGCGCg -3'
miRNA:   3'- cGGCGGCGCa---CCG------------CGC--------------AGCGGgCGCG- -5'
24957 3' -65.4 NC_005284.1 + 18563 0.69 0.184027
Target:  5'- cGCCGCCGUc-GGuCGUGUCGCUgacUGCGg -3'
miRNA:   3'- -CGGCGGCGcaCC-GCGCAGCGG---GCGCg -5'
24957 3' -65.4 NC_005284.1 + 21844 0.68 0.198284
Target:  5'- cGCCGCCgGCGUGG-GCGaUgGUgCCGcCGCc -3'
miRNA:   3'- -CGGCGG-CGCACCgCGC-AgCG-GGC-GCG- -5'
24957 3' -65.4 NC_005284.1 + 17882 0.7 0.146567
Target:  5'- gGCCGCCGgaucGGCGgG-CGCauCCGCGCa -3'
miRNA:   3'- -CGGCGGCgca-CCGCgCaGCG--GGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 30254 0.7 0.140682
Target:  5'- gGCCGUCgaGCG-GGCGCGuUCguucgcugucgagugGCUCGCGCg -3'
miRNA:   3'- -CGGCGG--CGCaCCGCGC-AG---------------CGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 8690 0.7 0.139244
Target:  5'- cGCCGCaaGCGUGcaggucacgguGCGCG-CGCUCGaCGCg -3'
miRNA:   3'- -CGGCGg-CGCAC-----------CGCGCaGCGGGC-GCG- -5'
24957 3' -65.4 NC_005284.1 + 25531 0.79 0.031275
Target:  5'- gGCCGUCGuCGUGcGCGCGUCGCUcuauuuugagCGUGCa -3'
miRNA:   3'- -CGGCGGC-GCAC-CGCGCAGCGG----------GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 1114 0.76 0.053367
Target:  5'- aGCCGCUgauuggcaacccggGCGacGGCGCGUCGCCauCGUGCu -3'
miRNA:   3'- -CGGCGG--------------CGCa-CCGCGCAGCGG--GCGCG- -5'
24957 3' -65.4 NC_005284.1 + 32784 0.74 0.07622
Target:  5'- cGCCuCUGCc-GGUGCGUCgGCCUGCGCg -3'
miRNA:   3'- -CGGcGGCGcaCCGCGCAG-CGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 27665 0.73 0.084764
Target:  5'- cGCCGCUauacgggccgGCGUGGCGCGcgggUCGCCgCugccugauuccgGCGCg -3'
miRNA:   3'- -CGGCGG----------CGCACCGCGC----AGCGG-G------------CGCG- -5'
24957 3' -65.4 NC_005284.1 + 24712 0.72 0.10466
Target:  5'- uGUCGCCGaagGGCGaaaCGaCGCCCGUGCg -3'
miRNA:   3'- -CGGCGGCgcaCCGC---GCaGCGGGCGCG- -5'
24957 3' -65.4 NC_005284.1 + 21670 0.71 0.116187
Target:  5'- uGCCGCCGCGUcGGCG-GUgGCCgC-CGUc -3'
miRNA:   3'- -CGGCGGCGCA-CCGCgCAgCGG-GcGCG- -5'
24957 3' -65.4 NC_005284.1 + 10673 0.71 0.125597
Target:  5'- uGCgCGCCGCG-GGCGCGaUCGacaCgGCGg -3'
miRNA:   3'- -CG-GCGGCGCaCCGCGC-AGCg--GgCGCg -5'
24957 3' -65.4 NC_005284.1 + 21808 0.71 0.128888
Target:  5'- gGCaGCCG-GUGGCGaCGgcgUGCCCgGCGCu -3'
miRNA:   3'- -CGgCGGCgCACCGC-GCa--GCGGG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.