miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24961 5' -54 NC_005284.1 + 30348 0.66 0.811061
Target:  5'- aCGUugAgaUCgAGGCGaUCGAGCgCGAGGGc -3'
miRNA:   3'- -GCAugU--AG-UCCGC-GGCUUGgGCUUCU- -5'
24961 5' -54 NC_005284.1 + 4555 0.66 0.791794
Target:  5'- cCGUucGCGUCAGGCuGCUGAACggCGAAu- -3'
miRNA:   3'- -GCA--UGUAGUCCG-CGGCUUGg-GCUUcu -5'
24961 5' -54 NC_005284.1 + 47217 0.66 0.785879
Target:  5'- gCGUGCA--GGGCgugcucgaGCCGGugcucuucuacaaagACCCGGAGAc -3'
miRNA:   3'- -GCAUGUagUCCG--------CGGCU---------------UGGGCUUCU- -5'
24961 5' -54 NC_005284.1 + 26217 0.66 0.775893
Target:  5'- cCGUGCgggcguauugccugaGUCGGGUcucuCCGAGCgCGAGGAg -3'
miRNA:   3'- -GCAUG---------------UAGUCCGc---GGCUUGgGCUUCU- -5'
24961 5' -54 NC_005284.1 + 29734 0.66 0.771856
Target:  5'- --cACGUCgGGGCGCCGAACagcaCCGGc-- -3'
miRNA:   3'- gcaUGUAG-UCCGCGGCUUG----GGCUucu -5'
24961 5' -54 NC_005284.1 + 47306 0.67 0.74089
Target:  5'- --cGgAUCGGGCaaGCCGAGCUCGGAu- -3'
miRNA:   3'- gcaUgUAGUCCG--CGGCUUGGGCUUcu -5'
24961 5' -54 NC_005284.1 + 9202 0.67 0.730331
Target:  5'- uGUAUgugAUCAGGCGUCGAuAgCCGAGu- -3'
miRNA:   3'- gCAUG---UAGUCCGCGGCU-UgGGCUUcu -5'
24961 5' -54 NC_005284.1 + 22371 0.67 0.730331
Target:  5'- uCGUGCGUCaguucaaauGGGCGCUGAcgaGCCgGcAGGu -3'
miRNA:   3'- -GCAUGUAG---------UCCGCGGCU---UGGgCuUCU- -5'
24961 5' -54 NC_005284.1 + 39088 0.67 0.708929
Target:  5'- cCGUGCAUguGGUGCagGAauuGCCCGucaccGAGAu -3'
miRNA:   3'- -GCAUGUAguCCGCGg-CU---UGGGC-----UUCU- -5'
24961 5' -54 NC_005284.1 + 31437 0.68 0.698108
Target:  5'- aCGUGCGccgcugCGGcGCGCCGGGCCCc---- -3'
miRNA:   3'- -GCAUGUa-----GUC-CGCGGCUUGGGcuucu -5'
24961 5' -54 NC_005284.1 + 52922 0.7 0.577195
Target:  5'- aCGUggaACGgcaGGGCGCCGAAgCCGAuGGc -3'
miRNA:   3'- -GCA---UGUag-UCCGCGGCUUgGGCUuCU- -5'
24961 5' -54 NC_005284.1 + 49149 0.7 0.577195
Target:  5'- gCGU-CGUCAaGGCGgaCGGGCCCGgcGAg -3'
miRNA:   3'- -GCAuGUAGU-CCGCg-GCUUGGGCuuCU- -5'
24961 5' -54 NC_005284.1 + 7809 0.73 0.376397
Target:  5'- gCGUGCAgc-GGUGCUGAACCCGcuGAc -3'
miRNA:   3'- -GCAUGUaguCCGCGGCUUGGGCuuCU- -5'
24961 5' -54 NC_005284.1 + 47175 1.09 0.001481
Target:  5'- gCGUACAUCAGGCGCCGAACCCGAAGAc -3'
miRNA:   3'- -GCAUGUAGUCCGCGGCUUGGGCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.