miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24962 3' -53.9 NC_005284.1 + 20719 0.66 0.814343
Target:  5'- -gGGCGGC-CGagGCGUauuUCCGAGCc -3'
miRNA:   3'- ugCUGCCGuGCg-UGUAgauAGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 44290 0.66 0.804836
Target:  5'- uACGACGGCGCGaACcUCUAcgUCGAa- -3'
miRNA:   3'- -UGCUGCCGUGCgUGuAGAUa-GGCUcg -5'
24962 3' -53.9 NC_005284.1 + 5956 0.66 0.804836
Target:  5'- gACGccACGGCugGCGCcg--AUCCGAucgucGCg -3'
miRNA:   3'- -UGC--UGCCGugCGUGuagaUAGGCU-----CG- -5'
24962 3' -53.9 NC_005284.1 + 13148 0.66 0.804836
Target:  5'- gAUGACGGCGauUACAgCUcUCCGAuGCg -3'
miRNA:   3'- -UGCUGCCGUgcGUGUaGAuAGGCU-CG- -5'
24962 3' -53.9 NC_005284.1 + 50894 0.66 0.795146
Target:  5'- -gGGCGGCucgGCGCAUUcAUCgaGAGCg -3'
miRNA:   3'- ugCUGCCGug-CGUGUAGaUAGg-CUCG- -5'
24962 3' -53.9 NC_005284.1 + 21774 0.66 0.795146
Target:  5'- cUGAgCGGC-UGCGCGUCgcUGUCCGAcacuGCa -3'
miRNA:   3'- uGCU-GCCGuGCGUGUAG--AUAGGCU----CG- -5'
24962 3' -53.9 NC_005284.1 + 16858 0.66 0.794167
Target:  5'- uCGACGGCgggucguAUGCGCAggugCUggCCGGuGCg -3'
miRNA:   3'- uGCUGCCG-------UGCGUGUa---GAuaGGCU-CG- -5'
24962 3' -53.9 NC_005284.1 + 19937 0.66 0.785283
Target:  5'- cGCGACGGUAauaGCAgcaAUCgacgccgGUgCCGGGCu -3'
miRNA:   3'- -UGCUGCCGUg--CGUg--UAGa------UA-GGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 19578 0.66 0.785283
Target:  5'- -aGACGGCcCGCACGcgCUGUuuGcacguGCa -3'
miRNA:   3'- ugCUGCCGuGCGUGUa-GAUAggCu----CG- -5'
24962 3' -53.9 NC_005284.1 + 12304 0.66 0.785283
Target:  5'- -gGGCGuGCGCGCACAcCU---UGAGCg -3'
miRNA:   3'- ugCUGC-CGUGCGUGUaGAuagGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 41625 0.66 0.785283
Target:  5'- uUGGCGGCACGgACGaCg---CGAGCg -3'
miRNA:   3'- uGCUGCCGUGCgUGUaGauagGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 36276 0.66 0.785283
Target:  5'- uCGACGccGUACGCcggaaucgACGUCacgCCGAGCg -3'
miRNA:   3'- uGCUGC--CGUGCG--------UGUAGauaGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 19462 0.66 0.785283
Target:  5'- --uGCGGCagGCGCugAUCgGUgCGGGCu -3'
miRNA:   3'- ugcUGCCG--UGCGugUAGaUAgGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 16630 0.66 0.782292
Target:  5'- cGCGAacCGGCACGCaggaucaggacuACAUCUcggguuuuccggccgUCGAGCg -3'
miRNA:   3'- -UGCU--GCCGUGCG------------UGUAGAua-------------GGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 10878 0.66 0.765085
Target:  5'- uAUGACGGCcCGC-CAgaaggCCGAGUa -3'
miRNA:   3'- -UGCUGCCGuGCGuGUagauaGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 46594 0.66 0.765085
Target:  5'- -aGugGGCaACGCcgaACGUC---CCGAGCg -3'
miRNA:   3'- ugCugCCG-UGCG---UGUAGauaGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 4390 0.67 0.754773
Target:  5'- uCGAgUGGCACgGCACAacggUUUcgUCGAGCg -3'
miRNA:   3'- uGCU-GCCGUG-CGUGU----AGAuaGGCUCG- -5'
24962 3' -53.9 NC_005284.1 + 40279 0.67 0.754773
Target:  5'- gGCGAUGGCugcUGCGCGUCggaUGUCUGcucgaAGCc -3'
miRNA:   3'- -UGCUGCCGu--GCGUGUAG---AUAGGC-----UCG- -5'
24962 3' -53.9 NC_005284.1 + 13359 0.67 0.753734
Target:  5'- uCGGCGGCAaGCugAcggugggcggcgaUCUGUCUGcGGCg -3'
miRNA:   3'- uGCUGCCGUgCGugU-------------AGAUAGGC-UCG- -5'
24962 3' -53.9 NC_005284.1 + 9607 0.67 0.743284
Target:  5'- cGCGGCGGCgaagcuucagaACGCGCAagcggcggaggcuUCagcgcaggCCGAGCu -3'
miRNA:   3'- -UGCUGCCG-----------UGCGUGU-------------AGaua-----GGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.